Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016409

Physical Location & Seq

Genomic Coordinates Reverse (-)

7904007 .. 7904533

Gene Structure 527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG099600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGTTTTGCGTGGACCCATCTTTAGTGGCAATTCAGAGGCTAACCAGCTCTTCATTATCTTCAGTGAGCTAGGAGCTCCCCCCAAGGAAGAGTTGGCTGGCCTGCCTGTGTTACCTGAATGGCATCGACCATACCCTGCACGGAACTTGGGGAATCTCGTCCCACCAGAAGTTTTGCCACTGCTCTTGAGAATGCTCAGCATCAATCCAGCTAACAGGATTTCTGCTCAAGAGTGCCTGGATGATCTGTTCTTTTTCCCACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

89

Amino Acids

9.97

Weight (kDa)

4.83

Isoelectric Point (pI)

64.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016409)

Species	Orthologous Gene IDs
malus_domestica	MD04G1180000.v1.1
rosa_chinensis	RchiOBHm_Chr3g0459641 RchiOBHm_Chr3g0459651
rosa_laevigata	RLG00000025081 RLG00000025082
rosa_multiflora	Rmu_co8426941.1_g000001 Rmu_sc0023706.1_g000008
rosa_samantha	Rh3AG094400 Rh3AG094500 Rh3BG098200 Rh3CG098500 Rh3CG098600 Rh3DG099600
rosa_wichuraiana	Rw0G013800 Rw3G008120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	237
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	4 cut(s)	49, 70, 77, 212
AluI	AGCT	4 cut(s)	49, 70, 77, 212
Alw21I	GWGCWC	1 cut(s)	79
AoxI	GGCC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	239
BfaI	CTAG	1 cut(s)	71
BlpI	GCTNAGC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	2 cut(s)	133, 210
Bpu1102I	GCTNAGC	1 cut(s)	197
BpuEI	CTTGAG	2 cut(s)	208, 213
BsaJI	CCNNGG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	244
Bsp1720I	GCTNAGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	16
BspQI	GCTCTTC	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	239
Bst6I	CTCTTC	2 cut(s)	56, 84
BstC8I	GCNNGC	2 cut(s)	100, 104
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	2 cut(s)	70, 179
Cac8I	GCNNGC	2 cut(s)	100, 104
Cfr13I	GGNCC	1 cut(s)	14
CspCI	CAANNNNNGTGG	2 cut(s)	168, 203
CviJI	RGCY	7 cut(s)	41, 49, 70, 77, 98, 102, 212
CviKI_1	RGCY	7 cut(s)	41, 49, 70, 77, 98, 102, 212
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	56, 84
EarI	CTCTTC	2 cut(s)	56, 84
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	84
FaiI	YATR	1 cut(s)	133
FaqI	GGGAC	1 cut(s)	146
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	102
HinfI	GANTC	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	2 cut(s)	187, 230
Hpy8I	GTNNAC	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	244
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	2 cut(s)	74, 82
LweI	GCATC	2 cut(s)	133, 210
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	3 cut(s)	43, 52, 101
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	239
NdeII	GATC	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	56
PctI	GAATGC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	5 cut(s)	51, 72, 79, 118, 214
SfaNI	GCATC	2 cut(s)	133, 210
SinI	GGWCC	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	187, 228
SmoI	CTYRAG	2 cut(s)	187, 228
Sse9I	AATT	1 cut(s)	31
SspMI	CTAG	1 cut(s)	71
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	84
TaqI	TCGA	1 cut(s)	127
TasI	AATT	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	154
TscAI	CASTG	2 cut(s)	70, 186
TspDTI	ATGAA	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	2 cut(s)	70, 186
VpaK11BI	GGWCC	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.