Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016409

Physical Location & Seq

Genomic Coordinates Forward (+)

7707931 .. 7739186

Gene Structure 31256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG098500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCCACCAACTATAACTCTCTCCTGCTATTCTCTTGCAATTTATCCTTCACTTTATCTATCCTTTGTTAGTTGGAGAGTCGTGAGGTCGATATTGAGGCAAGAAGCGGAAGAAGCTGAAGAAGCACATTTGACCCATGCTGAGGCCTCCCGTGGTGCCACTGTTCTCAGAACCTTGCCGGAGCACAACAACGTGATATCCTTGGTTGCGAGCGGCGATGTAGGTCCTGATTTCTATTGGGTTGTCGATTTCTTCGACGTGGATCTGTGCAGTTTGATCTACGAACCTGGTGGTCACCACGTTAACATGCCGCGTATTCGCTTCATCATGCGTGCTTTGCTGCTGGGGGTGGATCATCTCCATAGGCATGGAGTAGTCCACCGCGATTTGGAGCCTATGAACGTGTTTGTGAATCGGGCCACGGCTCAGGTGAAGATCGGAGGCTTTGAGCGGGCCAGACGTACCGCCGTTCCACCAGCCCCCCCTCCCGGAAGACGGTTACTCGCGACGCACCAGCACATGGTACATGGCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009966 GO:0009987 GO:0010646 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0097472 GO:0098542 GO:0140096 GO:1900424 GO:1900426 GO:1901564 GO:1902288 GO:1902290 GO:2000031 GO:2001023 GO:2001038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

178

Amino Acids

19.99

Weight (kDa)

7.22

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	41 - 155	1.6e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	45 - 152	2e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016409)

Species	Orthologous Gene IDs
malus_domestica	MD04G1180000.v1.1
rosa_chinensis	RchiOBHm_Chr3g0459641 RchiOBHm_Chr3g0459651
rosa_laevigata	RLG00000025081 RLG00000025082
rosa_multiflora	Rmu_co8426941.1_g000001 Rmu_sc0023706.1_g000008
rosa_samantha	Rh3AG094400 Rh3AG094500 Rh3BG098200 Rh3CG098500 Rh3CG098600 Rh3DG099600
rosa_wichuraiana	Rw0G013800 Rw3G008120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	155, 530
AccB7I	CCANNNNNTGG	1 cut(s)	520
AccBSI	CCGCTC	2 cut(s)	213, 451
AccII	CGCG	3 cut(s)	313, 384, 506
AciI	CCGC	6 cut(s)	107, 213, 311, 382, 451, 465
AclWI	GGATC	2 cut(s)	270, 360
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	2 cut(s)	463, 525
AfiI	CCNNNNNNNGG	5 cut(s)	142, 388, 488, 495, 520
AflIII	ACRYGT	1 cut(s)	402
AjiI	CACGTC	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw21I	GWGCWC	1 cut(s)	186
AlwI	GGATC	2 cut(s)	270, 360
AoxI	GGCC	3 cut(s)	144, 417, 453
ApeKI	GCWGC	1 cut(s)	340
AspS9I	GGNCC	3 cut(s)	224, 417, 453
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	2 cut(s)	287, 442
AvaII	GGWCC	1 cut(s)	224
BanI	GGYRCC	2 cut(s)	155, 530
BbsI	GAAGAC	1 cut(s)	499
Bbv12I	GWGCWC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	327
BceAI	ACGGC	2 cut(s)	438, 452
BciT130I	CCWGG	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	489
BisI	GCNGC	3 cut(s)	214, 311, 341
BlsI	GCNGC	3 cut(s)	215, 312, 342
Bme1390I	CCNGG	2 cut(s)	288, 489
Bme18I	GGWCC	1 cut(s)	224
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	3 cut(s)	224, 417, 453
BmiI	GGNNCC	3 cut(s)	157, 393, 532
BmrFI	CCNGG	2 cut(s)	288, 489
BpiI	GAAGAC	1 cut(s)	499
Bpu10I	CCTNAGC	2 cut(s)	141, 426
BpuMI	CCSGG	1 cut(s)	489
BsaJI	CCNNGG	3 cut(s)	151, 201, 420
Bsc4I	CCNNNNNNNGG	5 cut(s)	142, 388, 488, 495, 520
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	151, 201, 420
BseLI	CCNNNNNNNGG	5 cut(s)	142, 388, 488, 495, 520
BseMII	CTCAG	3 cut(s)	132, 181, 440
BseXI	GCAGC	1 cut(s)	327
BseYI	CCCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	289
Bsh1236I	CGCG	3 cut(s)	313, 384, 506
BshFI	GGCC	3 cut(s)	146, 419, 455
BshNI	GGYRCC	2 cut(s)	155, 530
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	179, 489
BslI	CCNNNNNNNGG	5 cut(s)	142, 388, 488, 495, 520
BsnI	GGCC	3 cut(s)	146, 419, 455
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	4 cut(s)	262, 276, 352, 435
Bsp68I	TCGCGA	1 cut(s)	506
BspACI	CCGC	6 cut(s)	107, 213, 311, 382, 451, 465
BspANI	GGCC	3 cut(s)	146, 419, 455
BspCNI	CTCAG	3 cut(s)	133, 180, 439
BspFNI	CGCG	3 cut(s)	313, 384, 506
BspLI	GGNNCC	3 cut(s)	157, 393, 532
BspPI	GGATC	2 cut(s)	270, 360
BspT107I	GGYRCC	2 cut(s)	155, 530
BsrBI	CCGCTC	2 cut(s)	213, 451
BssECI	CCNNGG	3 cut(s)	151, 201, 420
BssMI	GATC	4 cut(s)	262, 276, 352, 435
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	163, 498
BstC8I	GCNNGC	3 cut(s)	211, 333, 453
BstDEI	CTNAG	3 cut(s)	141, 167, 426
BstDSI	CCRYGG	2 cut(s)	151, 420
BstEII	GGTNACC	1 cut(s)	293
BstFNI	CGCG	3 cut(s)	313, 384, 506
BstKTI	GATC	4 cut(s)	265, 279, 355, 438
BstMBI	GATC	4 cut(s)	262, 276, 352, 435
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 122, 337
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	310
BstPI	GGTNACC	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	286, 487
BstUI	CGCG	3 cut(s)	313, 384, 506
BstV1I	GCAGC	1 cut(s)	327
BstV2I	GAAGAC	1 cut(s)	499
BstX2I	RGATCY	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	146, 419, 455
BtgI	CCRYGG	2 cut(s)	151, 420
BtgZI	GCGATG	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	159
BtuMI	TCGCGA	1 cut(s)	506
Cac8I	GCNNGC	3 cut(s)	211, 333, 453
Cfr13I	GGNCC	3 cut(s)	224, 417, 453
CseI	GACGC	1 cut(s)	517
CsiI	ACCWGGT	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	462, 524
CviAII	CATG	6 cut(s)	137, 307, 328, 368, 520, 527
CviJI	RGCY	8 cut(s)	116, 146, 394, 419, 425, 444, 455, 479
CviKI_1	RGCY	8 cut(s)	116, 146, 394, 419, 425, 444, 455, 479
CviQI	GTAC	2 cut(s)	462, 524
DdeI	CTNAG	3 cut(s)	141, 167, 426
DpnI	GATC	4 cut(s)	264, 278, 354, 437
DpnII	GATC	4 cut(s)	262, 276, 352, 435
Eco130I	CCWWGG	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	146
Eco32I	GATATC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	138
Eco91I	GGTNACC	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	286
EcoRV	GATATC	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	6 cut(s)	140, 310, 331, 371, 523, 530
FaiI	YATR	9 cut(s)	14, 138, 308, 329, 363, 369, 398, 521, 528
FatI	CATG	6 cut(s)	136, 306, 327, 367, 519, 526
FauI	CCCGC	1 cut(s)	444
Fnu4HI	GCNGC	3 cut(s)	214, 311, 341
Fsp4HI	GCNGC	3 cut(s)	214, 311, 341
GluI	GCNGC	3 cut(s)	214, 311, 341
GsaI	CCCAGC	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	146, 419, 455
HapII	CCGG	2 cut(s)	179, 489
HgaI	GACGC	1 cut(s)	517
Hin1II	CATG	6 cut(s)	140, 310, 331, 371, 523, 530
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	78, 412
HpaI	GTTAAC	1 cut(s)	304
HpaII	CCGG	2 cut(s)	179, 489
HphI	GGTGA	2 cut(s)	287, 442
Hpy166II	GTNNAC	2 cut(s)	304, 379
Hpy188I	TCNGA	2 cut(s)	170, 440
Hpy188III	TCNNGA	3 cut(s)	82, 227, 505
Hpy8I	GTNNAC	2 cut(s)	304, 379
Hpy99I	CGWCG	2 cut(s)	260, 511
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	2 cut(s)	163, 498
HpyCH4IV	ACGT	5 cut(s)	192, 258, 300, 402, 460
HpyCH4V	TGCA	2 cut(s)	38, 270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 122, 337
HpyF3I	CTNAG	3 cut(s)	141, 167, 426
HpySE526I	ACGT	5 cut(s)	192, 258, 300, 402, 460
Hsp92II	CATG	6 cut(s)	140, 310, 331, 371, 523, 530
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	262, 276, 352, 435
LmnI	GCTCC	2 cut(s)	181, 391
Lsp1109I	GCAGC	1 cut(s)	327
MabI	ACCWGGT	1 cut(s)	286
MaeII	ACGT	5 cut(s)	192, 258, 300, 402, 460
MaeIII	GTNAC	2 cut(s)	293, 498
MalI	GATC	4 cut(s)	264, 278, 354, 437
MbiI	CCGCTC	2 cut(s)	213, 451
MboI	GATC	4 cut(s)	262, 276, 352, 435
MboII	GAAGA	5 cut(s)	122, 131, 244, 445, 504
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	6 cut(s)	78, 90, 136, 157, 434, 495
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	2 cut(s)	179, 489
MspR9I	CCNGG	2 cut(s)	288, 489
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	3 cut(s)	313, 384, 506
MwoI	GCNNNNNNNGC	3 cut(s)	113, 122, 337
NciI	CCSGG	1 cut(s)	489
NdeII	GATC	4 cut(s)	262, 276, 352, 435
NlaIII	CATG	6 cut(s)	140, 310, 331, 371, 523, 530
NlaIV	GGNNCC	3 cut(s)	157, 393, 532
NmuCI	GTSAC	1 cut(s)	293
NruI	TCGCGA	1 cut(s)	506
NspI	RCATGY	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	520
PfoI	TCCNGGA	1 cut(s)	487
PkrI	GCNGC	3 cut(s)	215, 312, 342
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PpuMI	RGGWCCY	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	286
PspEI	GGTNACC	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	3 cut(s)	157, 393, 532
PspPI	GGNCC	3 cut(s)	224, 417, 453
PspPPI	RGGWCCY	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	262
RruI	TCGCGA	1 cut(s)	506
RsaI	GTAC	2 cut(s)	463, 525
RsaNI	GTAC	2 cut(s)	462, 524
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	3 cut(s)	214, 311, 341
Sau3AI	GATC	4 cut(s)	262, 276, 352, 435
Sau96I	GGNCC	3 cut(s)	224, 417, 453
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	288, 489
SduI	GDGCHC	1 cut(s)	186
SexAI	ACCWGGT	1 cut(s)	286
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	1 cut(s)	39
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	6 cut(s)	107, 213, 311, 382, 451, 465
StuI	AGGCCT	1 cut(s)	146
StyD4I	CCNGG	2 cut(s)	286, 487
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	163, 498
TaiI	ACGT	5 cut(s)	195, 261, 303, 405, 463
TaqI	TCGA	3 cut(s)	89, 246, 255
TasI	AATT	1 cut(s)	39
TauI	GCSGC	2 cut(s)	216, 313
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	2 cut(s)	313, 413
TspRI	CASTG	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	224
XceI	RCATGY	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.