Rmu_co8426941.1_g000001

Cell division control protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8426941.1
OG0016409
Physical Location & Seq
Forward (+)
543 .. 1199
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8426941.1_g000001.1.cds

Sequence Viewer

Length: 657 bp
atggaaaagtacgagaagctggagaaggtcggcgaaggcacctacggcaaggtgtacaaggccaaggacaaagccaccggccaattggtcgctctgaagaagacgcgcctcgagatggacgaagaaggcgtgccccccaccgccctccgagaggtctcgctcctccagatgctgtcccagtcgctctacgtcgtccgcctcctctgcgtcgaacacgtggacaacaagaaggacggcaagccggtgctctacctcgtcttcgagtatctcgacaccgatctgaagaagtttattgattcctaccggaagggaccgaatccgagggcgttggcgccggcgatggtccagagctttctgtttcagctctgtaaaggagtggcgcactgccactcccacggcgtgcttcaccgcgatttgaagccgcagaatctgctactggataaggatagagggattcttaagattgcggatctcggattgggccgagcgttcactgtgcctctcaagagctatactcatgagattgtgactctttggtatagagcgccggaggttctgctcgggtctactcactactccaccggcgttgatatgtggtccgtcggatgcatcttcggtcagtactctcatactctattcgatttcgtgtggatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

218

Amino Acids

24.78

Weight (kDa)

8.74

Isoelectric Point (pI)

16.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 38, 331
AccI GTMKAC 1 cut(s) 566
AccII CGCG 2 cut(s) 106, 411
AciI CCGC 5 cut(s) 141, 196, 409, 422, 467
AclWI GGATC 1 cut(s) 477
AcoI YGGCCR 1 cut(s) 79
AcuI CTGAAG 2 cut(s) 116, 302
AcvI CACGTG 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 332
AdeI CACNNNGTG 1 cut(s) 400
AfaI GTAC 3 cut(s) 11, 56, 623
AfiI CCNNNNNNNGG 2 cut(s) 115, 151
AflII CTTAAG 1 cut(s) 458
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 418
AluBI AGCT 4 cut(s) 19, 351, 364, 510
AluI AGCT 4 cut(s) 19, 351, 364, 510
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 1 cut(s) 477
AlwNI CAGNNNCTG 2 cut(s) 172, 430
Ama87I CYCGRG 2 cut(s) 110, 560
AoxI GGCC 3 cut(s) 60, 79, 481
AspLEI GCGC 4 cut(s) 108, 334, 382, 547
AspS9I GGNCC 4 cut(s) 311, 343, 481, 597
AsuHPI GGTGA 1 cut(s) 398
AvaI CYCGRG 2 cut(s) 110, 560
AvaII GGWCC 3 cut(s) 311, 343, 597
BaeGI GKGCMC 1 cut(s) 135
BanI GGYRCC 2 cut(s) 38, 331
BbrPI CACGTG 1 cut(s) 217
BbsI GAAGAC 2 cut(s) 107, 250
Bbv12I GWGCWC 1 cut(s) 249
BccI CCATC 2 cut(s) 109, 334
BceAI ACGGC 3 cut(s) 61, 250, 412
BcoDI GTCTC 1 cut(s) 160
BfoI RGCGCY 2 cut(s) 335, 548
BfrI CTTAAG 1 cut(s) 458
BisI GCNGC 1 cut(s) 422
BlsI GCNGC 1 cut(s) 423
BmcAI AGTACT 1 cut(s) 623
Bme18I GGWCC 3 cut(s) 311, 343, 597
BmeT110I CYCGRG 2 cut(s) 110, 560
BmgT120I GGNCC 4 cut(s) 311, 343, 481, 597
BmiI GGNNCC 3 cut(s) 40, 312, 333
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 3 cut(s) 159, 596, 618
BmuI ACTGGG 1 cut(s) 172
BpiI GAAGAC 2 cut(s) 107, 250
BplI GAGNNNNNCTC 2 cut(s) 499, 531
BpmI CTGGAG 2 cut(s) 41, 149
BpuEI CTTGAG 1 cut(s) 488
BsaAI YACGTR 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 3 cut(s) 63, 320, 394
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 151
Bse118I RCCGGY 4 cut(s) 77, 241, 334, 581
Bse1I ACTGG 2 cut(s) 178, 441
BseDI CCNNGG 3 cut(s) 63, 320, 394
BseGI GGATG 1 cut(s) 611
BseLI CCNNNNNNNGG 2 cut(s) 115, 151
BseNI ACTGG 2 cut(s) 178, 441
BseRI GAGGAG 2 cut(s) 152, 191
BseSI GKGCMC 1 cut(s) 135
Bsh1236I CGCG 2 cut(s) 106, 411
BshFI GGCC 3 cut(s) 62, 81, 483
BshNI GGYRCC 2 cut(s) 38, 331
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 2 cut(s) 110, 560
BsiSI CCGG 6 cut(s) 78, 242, 304, 335, 548, 582
BslFI GGGAC 2 cut(s) 160, 324
BslI CCNNNNNNNGG 2 cut(s) 115, 151
BsmAI GTCTC 1 cut(s) 160
BsmFI GGGAC 2 cut(s) 160, 324
BsnI GGCC 3 cut(s) 62, 81, 483
Bso31I GGTCTC 1 cut(s) 160
BsoBI CYCGRG 2 cut(s) 110, 560
Bsp1286I GDGCHC 2 cut(s) 135, 249
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 2 cut(s) 277, 469
BspACI CCGC 5 cut(s) 141, 196, 409, 422, 467
BspANI GGCC 3 cut(s) 62, 81, 483
BspFNI CGCG 2 cut(s) 106, 411
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 3 cut(s) 40, 312, 333
BspPI GGATC 1 cut(s) 477
BspT107I GGYRCC 2 cut(s) 38, 331
BspTI CTTAAG 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 160
BsrFI RCCGGY 4 cut(s) 77, 241, 334, 581
BsrGI TGTACA 1 cut(s) 54
BsrI ACTGG 2 cut(s) 178, 441
BssAI RCCGGY 4 cut(s) 77, 241, 334, 581
BssECI CCNNGG 3 cut(s) 63, 320, 394
BssMI GATC 2 cut(s) 277, 469
BssNI GRCGYC 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 496
BstACI GRCGYC 1 cut(s) 332
BstAFI CTTAAG 1 cut(s) 458
BstAPI GCANNNNNTGC 1 cut(s) 430
BstAUI TGTACA 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 4 cut(s) 131, 239, 336, 401
BstDSI CCRYGG 1 cut(s) 394
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 611
BstFNI CGCG 2 cut(s) 106, 411
BstH2I RGCGCY 2 cut(s) 335, 548
BstHHI GCGC 4 cut(s) 108, 334, 382, 547
BstKTI GATC 2 cut(s) 280, 472
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 2 cut(s) 277, 469
BstMWI GCNNNNNNNGC 3 cut(s) 45, 204, 430
BstSLI GKGCMC 1 cut(s) 135
BstUI CGCG 2 cut(s) 106, 411
BstV2I GAAGAC 2 cut(s) 107, 250
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuRI GGCC 3 cut(s) 62, 81, 483
BtgI CCRYGG 1 cut(s) 394
BtgZI GCGATG 1 cut(s) 353
BtsCI GGATG 1 cut(s) 611
BtsI GCAGTG 1 cut(s) 382
BtsIMutI CAGTG 2 cut(s) 382, 492
Cac8I GCNNGC 4 cut(s) 131, 239, 336, 401
CaiI CAGNNNCTG 2 cut(s) 172, 430
CciI TCATGA 1 cut(s) 517
CfoI GCGC 4 cut(s) 108, 334, 382, 547
Cfr10I RCCGGY 4 cut(s) 77, 241, 334, 581
Cfr13I GGNCC 4 cut(s) 311, 343, 481, 597
CseI GACGC 2 cut(s) 112, 196
Csp6I GTAC 3 cut(s) 10, 55, 622
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 1 cut(s) 518
CviQI GTAC 3 cut(s) 10, 55, 622
DinI GGCGCC 1 cut(s) 333
DpnI GATC 2 cut(s) 279, 471
DpnII GATC 2 cut(s) 277, 469
DraIII CACNNNGTG 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 79
EciI GGCGGA 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 160
Eco47I GGWCC 3 cut(s) 311, 343, 597
Eco57I CTGAAG 2 cut(s) 116, 302
Eco72I CACGTG 1 cut(s) 217
Eco88I CYCGRG 2 cut(s) 110, 560
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 611
EgeI GGCGCC 1 cut(s) 333
EheI GGCGCC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 1 cut(s) 521
FaiI YATR 5 cut(s) 513, 519, 540, 593, 630
FaqI GGGAC 2 cut(s) 160, 324
FatI CATG 1 cut(s) 517
FblI GTMKAC 1 cut(s) 566
Fnu4HI GCNGC 1 cut(s) 422
FokI GGATG 1 cut(s) 618
Fsp4HI GCNGC 1 cut(s) 422
GlaI GCGC 4 cut(s) 107, 333, 381, 546
GluI GCNGC 1 cut(s) 422
GsuI CTGGAG 2 cut(s) 41, 149
HaeII RGCGCY 2 cut(s) 335, 548
HaeIII GGCC 3 cut(s) 62, 81, 483
HapII CCGG 6 cut(s) 78, 242, 304, 335, 548, 582
HgaI GACGC 2 cut(s) 112, 196
HhaI GCGC 4 cut(s) 108, 334, 382, 547
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 1 cut(s) 521
Hin6I GCGC 4 cut(s) 106, 332, 380, 545
HinP1I GCGC 4 cut(s) 106, 332, 380, 545
HinfI GANTC 5 cut(s) 296, 316, 427, 454, 529
HpaII CCGG 6 cut(s) 78, 242, 304, 335, 548, 582
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 4 cut(s) 55, 220, 492, 567
Hpy188I TCNGA 6 cut(s) 96, 149, 282, 321, 476, 605
Hpy188III TCNNGA 6 cut(s) 112, 166, 269, 346, 505, 518
Hpy8I GTNNAC 4 cut(s) 55, 220, 492, 567
Hpy99I CGWCG 3 cut(s) 194, 212, 605
HpyAV CCTTC 5 cut(s) 19, 29, 119, 223, 301
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4IV ACGT 2 cut(s) 189, 216
HpyCH4V TGCA 1 cut(s) 609
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 204, 430
HpySE526I ACGT 2 cut(s) 189, 216
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 1 cut(s) 521
HspAI GCGC 4 cut(s) 106, 332, 380, 545
KasI GGCGCC 1 cut(s) 331
KroI GCCGGC 1 cut(s) 334
KroNI GCCGGC 1 cut(s) 336
Kzo9I GATC 2 cut(s) 277, 469
LmnI GCTCC 1 cut(s) 165
LweI GCATC 3 cut(s) 159, 596, 618
MaeII ACGT 2 cut(s) 189, 216
MaeIII GTNAC 1 cut(s) 526
MalI GATC 2 cut(s) 279, 471
MboI GATC 2 cut(s) 277, 469
MboII GAAGA 6 cut(s) 109, 112, 134, 250, 295, 604
MfeI CAATTG 1 cut(s) 83
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 135, 249
MluCI AATT 1 cut(s) 83
Mly113I GGCGCC 1 cut(s) 332
MlyI GAGTC 1 cut(s) 523
MmeI TCCRAC 1 cut(s) 583
Mph1103I ATGCAT 1 cut(s) 611
MreI CGCCGGCG 1 cut(s) 334
MroNI GCCGGC 1 cut(s) 334
MseI TTAA 2 cut(s) 459, 655
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 6 cut(s) 78, 242, 304, 335, 548, 582
MunI CAATTG 1 cut(s) 83
MvnI CGCG 2 cut(s) 106, 411
MwoI GCNNNNNNNGC 3 cut(s) 45, 204, 430
NaeI GCCGGC 1 cut(s) 336
NarI GGCGCC 1 cut(s) 332
NdeII GATC 2 cut(s) 277, 469
NgoMIV GCCGGC 1 cut(s) 334
NlaIII CATG 1 cut(s) 521
NlaIV GGNNCC 3 cut(s) 40, 312, 333
NmeAIII GCCGAG 1 cut(s) 509
NmuCI GTSAC 1 cut(s) 526
NsiI ATGCAT 1 cut(s) 611
PaeR7I CTCGAG 1 cut(s) 110
PagI TCATGA 1 cut(s) 517
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 126, 267
PdiI GCCGGC 1 cut(s) 336
PfeI GAWTC 4 cut(s) 296, 316, 427, 454
PkrI GCNGC 1 cut(s) 423
PleI GAGTC 1 cut(s) 523
PluTI GGCGCC 1 cut(s) 335
PmaCI CACGTG 1 cut(s) 217
PmlI CACGTG 1 cut(s) 217
PpsI GAGTC 1 cut(s) 523
Ppu21I YACGTR 1 cut(s) 217
PspCI CACGTG 1 cut(s) 217
PspN4I GGNNCC 3 cut(s) 40, 312, 333
PspPI GGNCC 4 cut(s) 311, 343, 481, 597
PstNI CAGNNNCTG 2 cut(s) 172, 430
PsuI RGATCY 1 cut(s) 469
RsaI GTAC 3 cut(s) 11, 56, 623
RsaNI GTAC 3 cut(s) 10, 55, 622
SaqAI TTAA 2 cut(s) 459, 655
SatI GCNGC 1 cut(s) 422
Sau3AI GATC 2 cut(s) 277, 469
Sau96I GGNCC 4 cut(s) 311, 343, 481, 597
ScaI AGTACT 1 cut(s) 623
SchI GAGTC 1 cut(s) 523
SduI GDGCHC 2 cut(s) 135, 249
SfaNI GCATC 3 cut(s) 159, 596, 618
SfoI GGCGCC 1 cut(s) 333
Sfr274I CTCGAG 1 cut(s) 110
SgrAI CRCCGGYG 2 cut(s) 334, 581
SinI GGWCC 3 cut(s) 311, 343, 597
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 3 cut(s) 110, 458, 503
SmoI CTYRAG 3 cut(s) 110, 458, 503
Sse9I AATT 1 cut(s) 83
SsiI CCGC 5 cut(s) 141, 196, 409, 422, 467
SspDI GGCGCC 1 cut(s) 331
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 496
TaiI ACGT 2 cut(s) 192, 219
TaqI TCGA 5 cut(s) 111, 210, 261, 270, 639
TaqII GACCGA 2 cut(s) 328, 605
TasI AATT 1 cut(s) 83
TatI WGTACW 2 cut(s) 54, 621
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 4 cut(s) 296, 316, 427, 454
Tru1I TTAA 2 cut(s) 459, 655
Tru9I TTAA 2 cut(s) 459, 655
TscAI CASTG 2 cut(s) 389, 499
TseFI GTSAC 1 cut(s) 526
Tsp45I GTSAC 1 cut(s) 526
TspGWI ACGGA 1 cut(s) 589
TspRI CASTG 2 cut(s) 389, 499
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 3 cut(s) 311, 343, 597
XagI CCTNNNNNAGG 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XhoI CTCGAG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 566
ZrmI AGTACT 1 cut(s) 623
Zsp2I ATGCAT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.