Rh3AG094500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0016409
Physical Location & Seq
Forward (+)
7739194 .. 7743314
4121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG094500.1

Sequence Viewer

Length: 318 bp
ATGAGTTCTACATTCGATGGGCCAGGGATGGATATCTGGGCACTCGGGTGCATTCTAGGAATTCCCAAGGAAGAGTGGCCAGCTCTGTTACCTGATTGGCATCCACGAGTCCCCGAACTGAATTTGATGGATCTCTTCCCACCAGAAGTCTTGCCACTTCTCTTGGAGGAAGCTATGATCTCCGAGTTACACAGACTTCAGTGTCTTTCGAAAGTGGCTTGTGGTCTCCCATATCTAACAATTTCACATATATCACGTTGTGAAGTTGGGTTTCAAACTGGAACTCTTGTTGACAATATTGTCTATTGCACATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.72

Weight (kDa)

4.51

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 201, 299
AclWI GGATC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 77
AcsI RAATTY 2 cut(s) 60, 121
AcuI CTGAAG 1 cut(s) 182
AdeI CACNNNGTG 1 cut(s) 260
AgsI TTSAA 1 cut(s) 275
AjnI CCWGG 1 cut(s) 22
AleI CACNNNNGTG 1 cut(s) 46
AluBI AGCT 2 cut(s) 83, 173
AluI AGCT 2 cut(s) 83, 173
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 2 cut(s) 20, 77
ApoI RAATTY 2 cut(s) 60, 121
AspS9I GGNCC 1 cut(s) 20
AsuII TTCGAA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 43
BalI TGGCCA 1 cut(s) 79
BauI CACGAG 1 cut(s) 105
BccI CCATC 3 cut(s) 11, 22, 121
BciT130I CCWGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 24
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 109
Bpu14I TTCGAA 1 cut(s) 209
BsaBI GATNNNNATC 2 cut(s) 32, 99
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 23, 66
Bse1I ACTGG 1 cut(s) 283
Bse8I GATNNNNATC 2 cut(s) 32, 99
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 23, 66
BseGI GGATG 2 cut(s) 33, 100
BseJI GATNNNNATC 2 cut(s) 32, 99
BseNI ACTGG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 43
BshFI GGCC 2 cut(s) 22, 79
BsiHKCI CYCGRG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 51
BsnI GGCC 2 cut(s) 22, 79
Bso31I GGTCTC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 44
Bsp119I TTCGAA 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 2 cut(s) 130, 177
BspANI GGCC 2 cut(s) 22, 79
BspPI GGATC 1 cut(s) 138
BspT104I TTCGAA 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 23, 66
BssMI GATC 2 cut(s) 130, 177
BssSI CACGAG 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 24
Bst6I CTCTTC 2 cut(s) 66, 140
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 81
BstF5I GGATG 2 cut(s) 33, 100
BstKTI GATC 2 cut(s) 133, 180
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 130, 177
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 2 cut(s) 22, 79
BtsCI GGATG 2 cut(s) 33, 100
BtsIMutI CAGTG 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 20
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviJI RGCY 5 cut(s) 22, 79, 83, 173, 218
CviKI_1 RGCY 5 cut(s) 22, 79, 83, 173, 218
DpnI GATC 2 cut(s) 132, 179
DpnII GATC 2 cut(s) 130, 177
DraIII CACNNNGTG 1 cut(s) 260
DrdI GACNNNNNNGTC 2 cut(s) 201, 299
DseDI GACNNNNNNGTC 2 cut(s) 201, 299
EaeI YGGCCR 1 cut(s) 77
Eam1104I CTCTTC 2 cut(s) 66, 140
EarI CTCTTC 2 cut(s) 66, 140
Eco130I CCWWGG 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 230
Eco32I GATATC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 22
EcoRV GATATC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaiI YATR 5 cut(s) 176, 232, 249, 251, 316
FaqI GGGAC 1 cut(s) 95
FokI GGATG 2 cut(s) 40, 87
FspBI CTAG 1 cut(s) 56
HaeIII GGCC 2 cut(s) 22, 79
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 2 cut(s) 51, 309
HpySE526I ACGT 1 cut(s) 256
Kzo9I GATC 2 cut(s) 130, 177
LpnPI CCDG 7 cut(s) 9, 22, 36, 93, 105, 156, 264
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 2 cut(s) 87, 186
MalI GATC 2 cut(s) 132, 179
MboI GATC 2 cut(s) 130, 177
MboII GAAGA 2 cut(s) 83, 127
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 79
MluCI AATT 3 cut(s) 60, 121, 240
MluNI TGGCCA 1 cut(s) 79
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 1 cut(s) 160
Mox20I TGGCCA 1 cut(s) 79
MscI TGGCCA 1 cut(s) 79
MslI CAYNNNNRTG 1 cut(s) 46
Msp20I TGGCCA 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 51
MvaI CCWGG 1 cut(s) 24
NdeII GATC 2 cut(s) 130, 177
NspV TTCGAA 1 cut(s) 209
OliI CACNNNNGTG 1 cut(s) 46
PctI GAATGC 1 cut(s) 51
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspPI GGNCC 1 cut(s) 20
PsuI RGATCY 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 46
Sau3AI GATC 2 cut(s) 130, 177
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 1 cut(s) 43
SetI ASST 4 cut(s) 85, 94, 175, 259
SfaNI GCATC 1 cut(s) 109
SfuI TTCGAA 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 46
Sse9I AATT 3 cut(s) 60, 121, 240
SspI AATATT 1 cut(s) 298
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 66
TaiI ACGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 15, 209
TasI AATT 3 cut(s) 60, 121, 240
TscAI CASTG 1 cut(s) 206
TspRI CASTG 1 cut(s) 206
XapI RAATTY 2 cut(s) 60, 121
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.