RchiOBHm_Chr3g0488341

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
35949292 .. 35951900
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45270

Sequence Viewer

Length: 312 bp
ATGCCAAGAAACGGAACTGTTTTTATATTGCTGATGAAGACAGCAACTTGGCTCAGGCTATTACAGCTGCCCTGCTGGAGCTTGACCAACTTCATTCTCTGCTTAATATCGACTCTATGCTGTTCAAAAACGCTATATGGAAGGGAGACAGCGAAAGCAGTAAAACTGATAATTCGTTCGAAAAGCAACGTCAATCAAACAGAAAGATTGTTATGGAAAATAAAGGCTGAAGACAAAGTGAAGGATTTCAGCACTTGCCTTGAAGCTGACCGTGTGGAGTTCTTTTCAAAACCATCATCATTACTAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.86

Weight (kDa)

9.67

Isoelectric Point (pI)

29.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 3 cut(s) 126, 263, 288
AluBI AGCT 3 cut(s) 67, 81, 266
AluI AGCT 3 cut(s) 67, 81, 266
Alw26I GTCTC 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 67
Asp700I GAANNNNTTC 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 44, 237
BbvI GCAGC 1 cut(s) 54
BccI CCATC 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 140
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
BpiI GAAGAC 2 cut(s) 44, 237
BpmI CTGGAG 1 cut(s) 97
Bpu10I CCTNAGC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 140
Bsp119I TTCGAA 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 19, 272
BstBI TTCGAA 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 53
BstMAI GTCTC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 2 cut(s) 44, 237
CviJI RGCY 6 cut(s) 52, 58, 67, 81, 227, 266
CviKI_1 RGCY 6 cut(s) 52, 58, 67, 81, 227, 266
DdeI CTNAG 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 249
FaiI YATR 5 cut(s) 26, 118, 136, 138, 214
Fnu4HI GCNGC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 97
HinfI GANTC 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 135, 235
HpyCH4III ACNGT 2 cut(s) 19, 272
HpyCH4IV ACGT 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 189
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 3 cut(s) 40, 61, 85
Lsp1109I GCAGC 1 cut(s) 54
MaeII ACGT 1 cut(s) 189
MboII GAAGA 2 cut(s) 49, 242
MluCI AATT 1 cut(s) 171
MlyI GAGTC 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 64
NspV TTCGAA 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 245
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 67
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 1 cut(s) 68
SchI GAGTC 1 cut(s) 106
SetI ASST 4 cut(s) 69, 83, 192, 268
SfuI TTCGAA 1 cut(s) 179
SgeI CNNG 9 cut(s) 18, 60, 67, 84, 88, 94, 267, 272, 284
Sse9I AATT 1 cut(s) 171
TaaI ACNGT 2 cut(s) 19, 272
TaiI ACGT 1 cut(s) 192
TaqI TCGA 2 cut(s) 110, 179
TasI AATT 1 cut(s) 171
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TseI GCWGC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 50, 82
TspGWI ACGGA 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.