Rh3AG151200

Phosphatidylinositol phosphatidylcholine transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0004254
Physical Location & Seq
Forward (+)
13504501 .. 13513181
8681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG151200.1

Sequence Viewer

Length: 330 bp
ATGCTTGCGAAACATATGCGTGTGCGAACAAGAGTGCCAAGGGCCCAAGGCTCCCAGGAACTGACAGAAAAGAAGATGGGTATTCCTAATCCAGAAGCGATCAAGCAGTTTCAATTGACAATGGAGGAAGTTGATGAGCTGCTGAAGAACACATTTGAGGTTAGACCCCATTTCTCTTTCAAGTTTGGGTATATTTGTTTCACCATAGTTGCTGCTACTATAGAAGGAAGAGAAGAGCAAGTATATGTGCCAGATGAAATGACTGCATTCTCAAGCAAGCTAGAGTACATCGCTGCAAGATGCCATCTTGGTGATCACGAAGTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

109

Amino Acids

12.64

Weight (kDa)

6.08

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 1 cut(s) 287
AgsI TTSAA 2 cut(s) 113, 181
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 2 cut(s) 139, 280
AluI AGCT 2 cut(s) 139, 280
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 1 cut(s) 42
ApaI GGGCCC 1 cut(s) 46
ApeKI GCWGC 3 cut(s) 139, 212, 293
AspS9I GGNCC 2 cut(s) 42, 43
AsuHPI GGTGA 2 cut(s) 193, 323
BaeGI GKGCMC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 46
BbvI GCAGC 3 cut(s) 126, 199, 280
BccI CCATC 2 cut(s) 70, 312
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 56
BclI TGATCA 1 cut(s) 313
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 3 cut(s) 140, 213, 294
BlsI GCNGC 3 cut(s) 141, 214, 295
Bme1390I CCNGG 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 42, 43
BmiI GGNNCC 2 cut(s) 44, 52
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 256
BsaJI CCNNGG 3 cut(s) 38, 46, 54
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 3 cut(s) 38, 46, 54
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 3 cut(s) 126, 199, 280
BshFI GGCC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 1 cut(s) 44
Bsp120I GGGCCC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 99, 313
BspANI GGCC 1 cut(s) 44
BspLI GGNNCC 2 cut(s) 44, 52
BspQI GCTCTTC 1 cut(s) 228
BssECI CCNNGG 3 cut(s) 38, 46, 54
BssMI GATC 2 cut(s) 99, 313
BssT1I CCWWGG 2 cut(s) 38, 46
Bst2UI CCWGG 1 cut(s) 56
Bst6I CTCTTC 2 cut(s) 223, 228
BstC8I GCNNGC 2 cut(s) 6, 278
BstKTI GATC 2 cut(s) 102, 316
BstMBI GATC 2 cut(s) 99, 313
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 46
BstV1I GCAGC 3 cut(s) 126, 199, 280
BsuRI GGCC 1 cut(s) 44
BtgZI GCGATG 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 6, 278
CaiI CAGNNNCTG 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 42, 43
Csp6I GTAC 1 cut(s) 286
CviJI RGCY 4 cut(s) 44, 51, 139, 280
CviKI_1 RGCY 4 cut(s) 44, 51, 139, 280
CviQI GTAC 1 cut(s) 286
DpnI GATC 2 cut(s) 101, 315
DpnII GATC 2 cut(s) 99, 313
Eam1104I CTCTTC 2 cut(s) 223, 228
EarI CTCTTC 2 cut(s) 223, 228
Eco130I CCWWGG 2 cut(s) 38, 46
Eco24I GRGCYC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 54
EcoT14I CCWWGG 2 cut(s) 38, 46
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 38, 46
FaiI YATR 7 cut(s) 15, 17, 192, 206, 221, 244, 246
FauNDI CATATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 3 cut(s) 140, 213, 294
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 3 cut(s) 140, 213, 294
FspBI CTAG 1 cut(s) 281
GluI GCNGC 3 cut(s) 140, 213, 294
HaeIII GGCC 1 cut(s) 44
HphI GGTGA 2 cut(s) 193, 323
Hpy188I TCNGA 1 cut(s) 329
Hpy188III TCNNGA 2 cut(s) 92, 317
HpyAV CCTTC 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 266, 296
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 2 cut(s) 99, 313
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 41, 68, 105, 264
Lsp1109I GCAGC 3 cut(s) 126, 199, 280
LweI GCATC 1 cut(s) 290
MaeI CTAG 1 cut(s) 281
MalI GATC 2 cut(s) 101, 315
MboI GATC 2 cut(s) 99, 313
MboII GAAGA 4 cut(s) 85, 157, 240, 245
MfeI CAATTG 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 1 cut(s) 113
MnlI CCTC 2 cut(s) 118, 151
MslI CAYNNNNRTG 2 cut(s) 18, 309
MspR9I CCNGG 1 cut(s) 56
MunI CAATTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 1 cut(s) 56
NdeI CATATG 1 cut(s) 15
NdeII GATC 2 cut(s) 99, 313
NlaIV GGNNCC 2 cut(s) 44, 52
PciSI GCTCTTC 1 cut(s) 228
PctI GAATGC 1 cut(s) 266
PkrI GCNGC 3 cut(s) 141, 214, 295
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 44, 52
PspOMI GGGCCC 1 cut(s) 42
PspPI GGNCC 2 cut(s) 42, 43
PstNI CAGNNNCTG 1 cut(s) 61
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 2 cut(s) 18, 309
SapI GCTCTTC 1 cut(s) 228
SatI GCNGC 3 cut(s) 140, 213, 294
Sau3AI GATC 2 cut(s) 99, 313
Sau96I GGNCC 2 cut(s) 42, 43
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 46
SetI ASST 3 cut(s) 141, 162, 282
SfaNI GCATC 1 cut(s) 290
SfcI CTRYAG 1 cut(s) 219
SmiMI CAYNNNNRTG 2 cut(s) 18, 309
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 1 cut(s) 113
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 2 cut(s) 38, 46
TasI AATT 1 cut(s) 113
TatI WGTACW 1 cut(s) 285
TseI GCWGC 3 cut(s) 139, 212, 293
TspDTI ATGAA 1 cut(s) 270
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.