Rh1CG282600

Phosphatidylinositol phosphatidylcholine transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004254
Physical Location & Seq
Reverse (-)
55436240 .. 55447082
10843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG282600.1

Sequence Viewer

Length: 369 bp
ATGAGCGTCTCCGACCGGAAAAACTACATAAACTCATACCTGAAAATCGACCATGGTGCACTCACCGGATACCGAGACTCGTACAAGCACATCCAGGGGCTCGCGTTGCTGCGCAAGCGAGTTGGGGCGATCTTGACTCAGTCGGCGAAGCGGATGTCGAGCAGGACATTGAGACTATTGTCTCGGCAGAAATGGTACAAGTATCTGCAAAGGGAACTGACAGAAAAGAAGATGGGTATTCCTAATCCAGAAGCGATCAAGCAGTTTCAATTGACAATGGAGGAAGTTGATGAGCTGCTGAAGAACACATTTGAGTTGCTGCTACTACAGAAGGAAGGGAAGAGCAAGTATATGTGCCAGATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

122

Amino Acids

14.4

Weight (kDa)

9.92

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 113
AccII CGCG 1 cut(s) 104
AciI CCGC 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 2 cut(s) 83, 197
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 4 cut(s) 13, 69, 166, 186
Alw44I GTGCAC 1 cut(s) 57
ApaLI GTGCAC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 109, 295, 319
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 3 cut(s) 96, 282, 306
BccI CCATC 1 cut(s) 226
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 1 cut(s) 95
BciVI GTATCC 1 cut(s) 62
BcoDI GTCTC 4 cut(s) 13, 69, 166, 186
BfmI CTRYAG 1 cut(s) 326
BfuI GTATCC 1 cut(s) 62
BisI GCNGC 3 cut(s) 110, 296, 320
BlsI GCNGC 3 cut(s) 111, 297, 321
Bme1390I CCNGG 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 95
BoxI GACNNNNGTC 1 cut(s) 178
BsaJI CCNNGG 2 cut(s) 52, 94
BsaWI WCCGGW 2 cut(s) 15, 65
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 52, 94
BseGI GGATG 2 cut(s) 90, 159
BseMII CTCAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 3 cut(s) 96, 282, 306
Bsh1236I CGCG 1 cut(s) 104
Bsh1285I CGRYCG 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 2 cut(s) 16, 66
BsmAI GTCTC 4 cut(s) 13, 69, 166, 186
BsmBI CGTCTC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 61, 102
Bsp143I GATC 2 cut(s) 129, 255
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 1 cut(s) 104
BspQI GCTCTTC 1 cut(s) 335
BssECI CCNNGG 2 cut(s) 52, 94
BssMI GATC 2 cut(s) 129, 255
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 102, 116
BstDEI CTNAG 1 cut(s) 138
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 2 cut(s) 90, 159
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 2 cut(s) 132, 258
BstMAI GTCTC 4 cut(s) 13, 69, 166, 186
BstMBI GATC 2 cut(s) 129, 255
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 106, 115
BstNI CCWGG 1 cut(s) 95
BstPAI GACNNNNGTC 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 61
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 3 cut(s) 96, 282, 306
BsuI GTATCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 52
BtsCI GGATG 2 cut(s) 90, 159
Cac8I GCNNGC 2 cut(s) 102, 116
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 82, 196
CviAII CATG 1 cut(s) 53
CviJI RGCY 2 cut(s) 100, 295
CviKI_1 RGCY 2 cut(s) 100, 295
CviQI GTAC 2 cut(s) 82, 196
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 131, 257
DpnII GATC 2 cut(s) 129, 255
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 1 cut(s) 56
FaiI YATR 5 cut(s) 29, 37, 54, 351, 353
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 3 cut(s) 110, 296, 320
FokI GGATG 2 cut(s) 77, 166
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 110, 296, 320
FspI TGCGCA 1 cut(s) 113
GlaI GCGC 1 cut(s) 113
GluI GCNGC 3 cut(s) 110, 296, 320
HapII CCGG 2 cut(s) 16, 66
HhaI GCGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 2 cut(s) 77, 136
HpaII CCGG 2 cut(s) 16, 66
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 133, 248
Hpy8I GTNNAC 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 325, 329
HpyCH4V TGCA 2 cut(s) 59, 208
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 115
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 129, 255
LguI GCTCTTC 1 cut(s) 335
LpnPI CCDG 7 cut(s) 29, 53, 79, 80, 107, 148, 261
Lsp1109I GCAGC 3 cut(s) 96, 282, 306
MalI GATC 2 cut(s) 131, 257
MboI GATC 2 cut(s) 129, 255
MboII GAAGA 3 cut(s) 241, 313, 352
MfeI CAATTG 1 cut(s) 269
MhlI GDGCHC 2 cut(s) 61, 102
MluCI AATT 1 cut(s) 269
MlyI GAGTC 2 cut(s) 71, 130
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 1 cut(s) 274
MspI CCGG 2 cut(s) 16, 66
MspR9I CCNGG 1 cut(s) 95
MunI CAATTG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 95
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 106, 115
NcoI CCATGG 1 cut(s) 52
NdeII GATC 2 cut(s) 129, 255
NlaIII CATG 1 cut(s) 56
NmeAIII GCCGAG 1 cut(s) 163
NsbI TGCGCA 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 335
PflFI GACNNNGTC 1 cut(s) 139
PkrI GCNGC 3 cut(s) 111, 297, 321
PleI GAGTC 2 cut(s) 71, 130
PpsI GAGTC 2 cut(s) 71, 130
PshAI GACNNNNGTC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PsyI GACNNNGTC 1 cut(s) 139
RsaI GTAC 2 cut(s) 83, 197
RsaNI GTAC 2 cut(s) 82, 196
SapI GCTCTTC 1 cut(s) 335
SatI GCNGC 3 cut(s) 110, 296, 320
Sau3AI GATC 2 cut(s) 129, 255
SchI GAGTC 2 cut(s) 71, 130
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 61, 102
SetI ASST 2 cut(s) 42, 297
SfcI CTRYAG 1 cut(s) 326
Sse9I AATT 1 cut(s) 269
SsiI CCGC 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 52
TaqI TCGA 2 cut(s) 48, 158
TasI AATT 1 cut(s) 269
TseI GCWGC 3 cut(s) 109, 295, 319
Tth111I GACNNNGTC 1 cut(s) 139
VneI GTGCAC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.