Rh5AG502900

Phosphatidylinositol phosphatidylcholine transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004254
Physical Location & Seq
Forward (+)
85101774 .. 85104080
2307 bp
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UTR
Exon/CDS
Intron
Rh5AG502900.1

Sequence Viewer

Length: 285 bp
ATGTTTAAATATCTGCAAAGGGAACCGACAGAAGACAAGATGGGTGTTCCTGATCCAGAAGCGATCAAGCAGTTTCAGTTGTTAATGGAAGAAGTGCCTCTTCATCTTCAGAATGTGCACCAAGGGTATCCAAATGAGACATTTGTGCGGTTTCTTAAAGCGAGGGACTGGAATGTTGGCAAAGCCCACAAAATGGGTCTTCCTGTCATTGCTATTGGTGTTGGGCTCAGCACATATGACAAAGCTTCTGTAAGGATGAGATGTGGTTATAATGATATTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

94

Amino Acids

10.79

Weight (kDa)

7.88

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 36 - 65 6.5e-09 CRAL/TRIO, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 270
AccB7I CCANNNNNTGG 1 cut(s) 193
AciI CCGC 1 cut(s) 148
AclWI GGATC 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 193
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 131
Alw44I GTGCAC 1 cut(s) 116
AlwI GGATC 1 cut(s) 47
ApaLI GTGCAC 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 120
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 2 cut(s) 39, 191
Bbv12I GWGCWC 1 cut(s) 120
BccI CCATC 1 cut(s) 34
BciVI GTATCC 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 131
BfuI GTATCC 1 cut(s) 138
BlpI GCTNAGC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 24
BpiI GAAGAC 2 cut(s) 39, 191
Bpu1102I GCTNAGC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 120
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 120, 228
Bsp143I GATC 2 cut(s) 52, 63
Bsp1720I GCTNAGC 1 cut(s) 227
BspACI CCGC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 207
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 2 cut(s) 52, 63
BssT1I CCWWGG 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 2 cut(s) 55, 66
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 52, 63
BstSLI GKGCMC 1 cut(s) 120
BstV2I GAAGAC 2 cut(s) 39, 191
BsuI GTATCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 261
CviJI RGCY 3 cut(s) 185, 226, 245
CviKI_1 RGCY 3 cut(s) 185, 226, 245
DdeI CTNAG 1 cut(s) 227
DpnI GATC 2 cut(s) 54, 65
DpnII GATC 2 cut(s) 52, 63
DraI TTTAAA 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 121
FaiI YATR 4 cut(s) 235, 237, 270, 283
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 1 cut(s) 179
FauNDI CATATG 1 cut(s) 235
FokI GGATG 1 cut(s) 268
FriOI GRGCYC 1 cut(s) 228
HindIII AAGCTT 1 cut(s) 243
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 2 cut(s) 50, 56
Hpy8I GTNNAC 1 cut(s) 118
HpyCH4V TGCA 2 cut(s) 16, 118
HpyF3I CTNAG 1 cut(s) 227
Kzo9I GATC 2 cut(s) 52, 63
LpnPI CCDG 4 cut(s) 63, 69, 154, 216
MalI GATC 2 cut(s) 54, 65
MboI GATC 2 cut(s) 52, 63
MboII GAAGA 5 cut(s) 44, 92, 98, 101, 191
MhlI GDGCHC 2 cut(s) 120, 228
MnlI CCTC 2 cut(s) 108, 156
MseI TTAA 3 cut(s) 6, 83, 156
NdeI CATATG 1 cut(s) 235
NdeII GATC 2 cut(s) 52, 63
NlaIV GGNNCC 1 cut(s) 24
PflMI CCANNNNNTGG 1 cut(s) 193
PsiI TTATAA 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 24
SaqAI TTAA 3 cut(s) 6, 83, 156
Sau3AI GATC 2 cut(s) 52, 63
SduI GDGCHC 2 cut(s) 120, 228
SetI ASST 1 cut(s) 247
SgeI CNNG 8 cut(s) 49, 62, 68, 79, 134, 174, 181, 215
SsiI CCGC 1 cut(s) 148
StyI CCWWGG 1 cut(s) 121
Tru1I TTAA 3 cut(s) 6, 83, 156
Tru9I TTAA 3 cut(s) 6, 83, 156
TspDTI ATGAA 2 cut(s) 92, 270
Van91I CCANNNNNTGG 1 cut(s) 193
VneI GTGCAC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.