Rh3BG174800

Phosphatidylinositol phosphatidylcholine transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0004254
Physical Location & Seq
Forward (+)
15085102 .. 15093782
8681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG174800.1

Sequence Viewer

Length: 252 bp
ATGCTTGCGAAACATATGCGTGTGCGAACAAGAGTGCCAAGGGCCCAAGGCTCCCAGGAACTGACAGAAAAGAAGATGGGTATTCCTAATCCAGAAGCGATCAAGCAGTTTCAATTGACAATGGAGGAAGTTGCTGCTACTATAGAAGGAAGAGAAGAGCAAGTATATGTGCCAGATGAAATGACTGCATTCTCAAGCAAGCTAGAGTACATCGCTGCAAGATGCCATCTTGGTGATCACGAAGTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

83

Amino Acids

9.5

Weight (kDa)

5.89

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 1 cut(s) 42
ApaI GGGCCC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 134, 215
AspS9I GGNCC 2 cut(s) 42, 43
AsuHPI GGTGA 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 46
BbvI GCAGC 2 cut(s) 121, 202
BccI CCATC 2 cut(s) 70, 234
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 56
BclI TGATCA 1 cut(s) 235
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 141
BisI GCNGC 2 cut(s) 135, 216
BlsI GCNGC 2 cut(s) 136, 217
Bme1390I CCNGG 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 42, 43
BmiI GGNNCC 2 cut(s) 44, 52
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 178
BsaJI CCNNGG 3 cut(s) 38, 46, 54
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 3 cut(s) 38, 46, 54
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 2 cut(s) 121, 202
BshFI GGCC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 1 cut(s) 44
Bsp120I GGGCCC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 99, 235
BspANI GGCC 1 cut(s) 44
BspLI GGNNCC 2 cut(s) 44, 52
BspQI GCTCTTC 1 cut(s) 150
BssECI CCNNGG 3 cut(s) 38, 46, 54
BssMI GATC 2 cut(s) 99, 235
BssT1I CCWWGG 2 cut(s) 38, 46
Bst2UI CCWGG 1 cut(s) 56
Bst6I CTCTTC 2 cut(s) 145, 150
BstC8I GCNNGC 2 cut(s) 6, 200
BstKTI GATC 2 cut(s) 102, 238
BstMBI GATC 2 cut(s) 99, 235
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 121, 202
BsuRI GGCC 1 cut(s) 44
BtgZI GCGATG 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 6, 200
CaiI CAGNNNCTG 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 42, 43
Csp6I GTAC 1 cut(s) 208
CviJI RGCY 3 cut(s) 44, 51, 202
CviKI_1 RGCY 3 cut(s) 44, 51, 202
CviQI GTAC 1 cut(s) 208
DpnI GATC 2 cut(s) 101, 237
DpnII GATC 2 cut(s) 99, 235
Eam1104I CTCTTC 2 cut(s) 145, 150
EarI CTCTTC 2 cut(s) 145, 150
Eco130I CCWWGG 2 cut(s) 38, 46
Eco24I GRGCYC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 54
EcoT14I CCWWGG 2 cut(s) 38, 46
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 38, 46
FaiI YATR 5 cut(s) 15, 17, 143, 166, 168
FauNDI CATATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 2 cut(s) 135, 216
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 2 cut(s) 135, 216
FspBI CTAG 1 cut(s) 203
GluI GCNGC 2 cut(s) 135, 216
HaeIII GGCC 1 cut(s) 44
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 2 cut(s) 92, 239
HpyAV CCTTC 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 188, 218
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 2 cut(s) 99, 235
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 41, 68, 105, 186
Lsp1109I GCAGC 2 cut(s) 121, 202
LweI GCATC 1 cut(s) 212
MaeI CTAG 1 cut(s) 203
MalI GATC 2 cut(s) 101, 237
MboI GATC 2 cut(s) 99, 235
MboII GAAGA 3 cut(s) 85, 162, 167
MfeI CAATTG 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 1 cut(s) 113
MnlI CCTC 1 cut(s) 118
MslI CAYNNNNRTG 2 cut(s) 18, 231
MspR9I CCNGG 1 cut(s) 56
MunI CAATTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 188
MvaI CCWGG 1 cut(s) 56
NdeI CATATG 1 cut(s) 15
NdeII GATC 2 cut(s) 99, 235
NlaIV GGNNCC 2 cut(s) 44, 52
PciSI GCTCTTC 1 cut(s) 150
PctI GAATGC 1 cut(s) 188
PkrI GCNGC 2 cut(s) 136, 217
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 44, 52
PspOMI GGGCCC 1 cut(s) 42
PspPI GGNCC 2 cut(s) 42, 43
PstNI CAGNNNCTG 1 cut(s) 61
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 2 cut(s) 18, 231
SapI GCTCTTC 1 cut(s) 150
SatI GCNGC 2 cut(s) 135, 216
Sau3AI GATC 2 cut(s) 99, 235
Sau96I GGNCC 2 cut(s) 42, 43
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 46
SetI ASST 1 cut(s) 204
SfaNI GCATC 1 cut(s) 212
SfcI CTRYAG 1 cut(s) 141
SmiMI CAYNNNNRTG 2 cut(s) 18, 231
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 1 cut(s) 113
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 2 cut(s) 38, 46
TasI AATT 1 cut(s) 113
TatI WGTACW 1 cut(s) 207
TseI GCWGC 2 cut(s) 134, 215
TspDTI ATGAA 1 cut(s) 192
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.