Rh7AG385400

Phosphatidylinositol phosphatidylcholine transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004254
Physical Location & Seq
Reverse (-)
50495986 .. 50507142
11157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG385400.1

Sequence Viewer

Length: 324 bp
ATGAGGCATCTTAAAAAGTCATCGAATTCAGGATTTACTAGAGAGCCTCCGCGGACGCCGCCGGATTATCCTCTTCGTTCTGGGGAAATTGAAATAAATGGTACAAGGGAACTGACAGAAAAGAAGATGGGTATTCCTTATCCAGTAGCGATCAAGCAGTTTCAATTGACAATGGAGGAAGTTGATGAGCTGCTGAAGAGCAACACATTTGAGCTTGGTTATCTGGTCAACCTGCGGACCTTGCTTTGTAGGAAGTGCAATGAAACATTCAAAAGACTGGAGGGGAAAGATCAGAAATGCTTAAGCTTCAATCAAATGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

107

Amino Acids

12.47

Weight (kDa)

9.07

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 240
AccII CGCG 1 cut(s) 52
AciI CCGC 4 cut(s) 50, 52, 59, 235
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 1 cut(s) 103
AflII CTTAAG 1 cut(s) 301
AgsI TTSAA 4 cut(s) 92, 164, 271, 310
AluBI AGCT 3 cut(s) 190, 214, 306
AluI AGCT 3 cut(s) 190, 214, 306
ApeKI GCWGC 1 cut(s) 190
ApoI RAATTY 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 237
AvaII GGWCC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 177
BccI CCATC 1 cut(s) 121
BfaI CTAG 1 cut(s) 39
BfrI CTTAAG 1 cut(s) 301
BfuAI ACCTGC 1 cut(s) 240
BisI GCNGC 2 cut(s) 59, 191
BlsI GCNGC 2 cut(s) 60, 192
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 237
BmsI GCATC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 143, 282
Bse3DI GCAATG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 265
BseNI ACTGG 2 cut(s) 143, 282
BseXI GCAGC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 62
Bsp143I GATC 2 cut(s) 150, 289
BspACI CCGC 4 cut(s) 50, 52, 59, 235
BspFNI CGCG 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 240
BspQI GCTCTTC 1 cut(s) 191
BspTI CTTAAG 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 2 cut(s) 143, 282
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 2 cut(s) 150, 289
BssNI GRCGYC 1 cut(s) 56
Bst6I CTCTTC 2 cut(s) 78, 191
BstACI GRCGYC 1 cut(s) 56
BstAFI CTTAAG 1 cut(s) 301
BstDSI CCRYGG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 52
BstKTI GATC 2 cut(s) 153, 292
BstMBI GATC 2 cut(s) 150, 289
BstMWI GCNNNNNNNGC 2 cut(s) 58, 241
BstUI CGCG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 50
BveI ACCTGC 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 237
Cfr42I CCGCGG 1 cut(s) 53
CseI GACGC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 102
CviJI RGCY 4 cut(s) 46, 190, 214, 306
CviKI_1 RGCY 4 cut(s) 46, 190, 214, 306
CviQI GTAC 1 cut(s) 102
DpnI GATC 2 cut(s) 152, 291
DpnII GATC 2 cut(s) 150, 289
Eam1104I CTCTTC 2 cut(s) 78, 191
EarI CTCTTC 2 cut(s) 78, 191
Eco47I GGWCC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 59, 191
Fsp4HI GCNGC 2 cut(s) 59, 191
FspBI CTAG 1 cut(s) 39
GluI GCNGC 2 cut(s) 59, 191
GsuI CTGGAG 1 cut(s) 299
HapII CCGG 1 cut(s) 62
HgaI GACGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 304
HpaII CCGG 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 241
Hsp92I GRCGYC 1 cut(s) 56
KspI CCGCGG 1 cut(s) 53
Kzo9I GATC 2 cut(s) 150, 289
LguI GCTCTTC 1 cut(s) 191
LpnPI CCDG 7 cut(s) 15, 66, 75, 156, 209, 245, 263
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 39
MalI GATC 2 cut(s) 152, 291
MboI GATC 2 cut(s) 150, 289
MboII GAAGA 3 cut(s) 65, 136, 208
MfeI CAATTG 1 cut(s) 164
MluCI AATT 3 cut(s) 25, 87, 164
MnlI CCTC 4 cut(s) 57, 81, 169, 274
MseI TTAA 2 cut(s) 12, 302
MspA1I CMGCKG 1 cut(s) 52
MspCI CTTAAG 1 cut(s) 301
MspI CCGG 1 cut(s) 62
MunI CAATTG 1 cut(s) 164
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 58, 241
NdeII GATC 2 cut(s) 150, 289
PciSI GCTCTTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 60, 192
PspPI GGNCC 1 cut(s) 237
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SacII CCGCGG 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 12, 302
SatI GCNGC 2 cut(s) 59, 191
Sau3AI GATC 2 cut(s) 150, 289
Sau96I GGNCC 1 cut(s) 237
SetI ASST 5 cut(s) 192, 216, 234, 242, 308
SfaNI GCATC 1 cut(s) 16
Sfr303I CCGCGG 1 cut(s) 53
SgrBI CCGCGG 1 cut(s) 53
SinI GGWCC 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 3 cut(s) 25, 87, 164
SsiI CCGC 4 cut(s) 50, 52, 59, 235
SspMI CTAG 1 cut(s) 39
TaqI TCGA 1 cut(s) 23
TasI AATT 3 cut(s) 25, 87, 164
TauI GCSGC 1 cut(s) 61
Tru1I TTAA 2 cut(s) 12, 302
Tru9I TTAA 2 cut(s) 12, 302
TseI GCWGC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 276
Vha464I CTTAAG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 25
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.