Rh1AG122700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
22967038 .. 22968044
1007 bp
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UTR
Exon/CDS
Intron
Rh1AG122700.1

Sequence Viewer

Length: 189 bp
ATGGGAGTCTTATTTCACGGAGACCAAAATCGATGGATGAAATGCAACTCCAAGCCAAGTCTTGAAGTTGCTGCTACTATAGGAGGAAGAGAAGAGCAAGTATATGTGCCAGATGAAATGACTGCATTCTCAAGCAAGCTCGAGTACATCCCTGCAAGATGCCATCTTAGTGATCATGAGGTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.06

Weight (kDa)

5.44

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 146
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 15
Ama87I CYCGRG 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 140
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 27, 171
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 78
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 140
BmsI GCATC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 115
Bsa29I ATCGAT 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 15
BseCI ATCGAT 1 cut(s) 31
BseGI GGATG 2 cut(s) 42, 147
BseXI GCAGC 1 cut(s) 58
BshVI ATCGAT 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 15
BsmI GAATGC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 140
Bsp143I GATC 1 cut(s) 172
BspDI ATCGAT 1 cut(s) 31
BspHI TCATGA 1 cut(s) 175
BspQI GCTCTTC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 15
BssMI GATC 1 cut(s) 172
Bst6I CTCTTC 2 cut(s) 82, 87
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 42, 147
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 31
BsuTUI ATCGAT 1 cut(s) 31
BtsCI GGATG 2 cut(s) 42, 147
Cac8I GCNNGC 1 cut(s) 137
CciI TCATGA 1 cut(s) 175
ClaI ATCGAT 1 cut(s) 31
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 176
CviJI RGCY 2 cut(s) 55, 139
CviKI_1 RGCY 2 cut(s) 55, 139
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 167
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 82, 87
EarI CTCTTC 2 cut(s) 82, 87
Eco31I GGTCTC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 140
FaeI CATG 1 cut(s) 179
FaiI YATR 4 cut(s) 80, 103, 105, 177
FatI CATG 1 cut(s) 175
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 49, 134
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
Hin1II CATG 1 cut(s) 179
HinfI GANTC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 188
Hpy188III TCNNGA 2 cut(s) 62, 176
HpyCH4V TGCA 3 cut(s) 45, 125, 155
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 1 cut(s) 172
LguI GCTCTTC 1 cut(s) 87
LpnPI CCDG 2 cut(s) 123, 165
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 149
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 2 cut(s) 99, 104
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 2 cut(s) 77, 172
MslI CAYNNNNRTG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 125
NdeII GATC 1 cut(s) 172
NlaIII CATG 1 cut(s) 179
PaeR7I CTCGAG 1 cut(s) 140
PagI TCATGA 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 87
PctI GAATGC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PspXI VCTCGAGB 1 cut(s) 140
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 87
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 172
SchI GAGTC 1 cut(s) 15
SetI ASST 2 cut(s) 141, 183
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 2 cut(s) 130, 140
SmoI CTYRAG 2 cut(s) 130, 140
TaqI TCGA 2 cut(s) 31, 141
TatI WGTACW 1 cut(s) 144
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 53, 129
TspGWI ACGGA 1 cut(s) 33
XhoI CTCGAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.