Rh5CG548200

Phosphatidylinositol phosphatidylcholine transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004254
Physical Location & Seq
Forward (+)
76474460 .. 76478110
3651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG548200.1

Sequence Viewer

Length: 210 bp
ATGGACTCAGATCTCCACATGCTTGGTCAAAATATGAATGTGCACCAAGGGTATCCAAATGAGACATTTGTGCGGTTTCTTAAAGCGAGGGACTGGAATGTTGGCAAAGCCCACAAAATGGGTCTTCCTGTCATTGCTATTGGTGTTGGGCTCAGCACATATGACAAAGCTTCTGTAAGGATGATATGTGGTTATAATGATATTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

69

Amino Acids

7.71

Weight (kDa)

7.93

Isoelectric Point (pI)

25.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 14 - 40 1.3e-08 CRAL/TRIO, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AccB7I CCANNNNNTGG 1 cut(s) 118
AciI CCGC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 56
Alw44I GTGCAC 1 cut(s) 41
ApaLI GTGCAC 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 45
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 45
BciVI GTATCC 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 56
BfuI GTATCC 1 cut(s) 63
BglII AGATCT 1 cut(s) 10
BlpI GCTNAGC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 116
Bpu1102I GCTNAGC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 21, 166
BseNI ACTGG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 45
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 104
Bsp1286I GDGCHC 2 cut(s) 45, 153
Bsp143I GATC 1 cut(s) 10
Bsp1720I GCTNAGC 1 cut(s) 152
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 2 cut(s) 20, 165
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 7, 152
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 23
BstYI RGATCY 1 cut(s) 10
BsuI GTATCC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 186
CviAII CATG 1 cut(s) 19
CviJI RGCY 3 cut(s) 110, 151, 170
CviKI_1 RGCY 3 cut(s) 110, 151, 170
DdeI CTNAG 2 cut(s) 7, 152
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 22
FaiI YATR 7 cut(s) 20, 35, 160, 162, 187, 195, 208
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 18
FauNDI CATATG 1 cut(s) 160
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 43
HpyF3I CTNAG 2 cut(s) 7, 152
Hsp92II CATG 1 cut(s) 22
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 2 cut(s) 79, 141
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 116
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 45, 153
MnlI CCTC 1 cut(s) 81
MseI TTAA 1 cut(s) 81
NdeI CATATG 1 cut(s) 160
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 22
NspI RCATGY 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 118
PsiI TTATAA 1 cut(s) 195
PsuI RGATCY 1 cut(s) 10
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 1 cut(s) 10
SduI GDGCHC 2 cut(s) 45, 153
SetI ASST 1 cut(s) 172
SgeI CNNG 6 cut(s) 31, 35, 59, 99, 106, 140
SsiI CCGC 1 cut(s) 73
StyI CCWWGG 1 cut(s) 46
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TspDTI ATGAA 2 cut(s) 50, 195
Van91I CCANNNNNTGG 1 cut(s) 118
VneI GTGCAC 1 cut(s) 41
XceI RCATGY 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.