Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004254

Physical Location & Seq

Genomic Coordinates Forward (+)

34410735 .. 34430848

Gene Structure 20114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG262200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGACGATGGGATGCCTAGTGCTAAATCCAATATTGGGAGCTTCGATTGATGAGGAACTAAGGAGGACTGCATGCAGCAGCAGGTCATTGAGACTAGTGTGTCGGCAGAAATGGTACAAGTCTTTCTTTATGTTTAAATATCTTCCAAGGGAACTGACAGAAAAGAAGATGGGTATTCCTTATCCAGTAGTGATCAAGCAGTTTCAATTGACAATGGAGGAAGGCTTTGTAGGAAGTGCAATGAAACATTCAGAAGACTGGAGGGGAAAGATCAGAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

94

Amino Acids

10.98

Weight (kDa)

9.67

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004254)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130661 RchiOBHm_Chr2g0145841 RchiOBHm_Chr3g0469501 RchiOBHm_Chr3g0488341 RchiOBHm_Chr3g0488401 RchiOBHm_Chr5g0004771
rosa_roxburghii	Rroxscaffold_2G00108600 Rroxscaffold_2G00123300 Rroxscaffold_2G00154730 Rroxscaffold_4G00314390 Rroxscaffold_6G00389090
rosa_rugosa	Rorug01G0312500.1
rosa_samantha	Rh1AG122700 Rh1AG122800 Rh1CG117300 Rh1CG282600 Rh2BG225200 Rh2DG478000 Rh2DG529000 Rh3AG151200 Rh3AG272100 Rh3BG118200 Rh3BG174800 Rh4DG041100 Rh5AG262200 Rh5AG284400 Rh5AG502900 Rh5CG548200 Rh5DG426200 Rh7AG057600 Rh7AG086400 Rh7AG385400
rosa_wichuraiana	Rw3G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	99
Acc36I	ACCTGC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	206
AhlI	ACTAGT	1 cut(s)	94
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	75, 78
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	87, 90
BccI	CCATC	1 cut(s)	163
BclI	TGATCA	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	85
BcuI	ACTAGT	1 cut(s)	94
BfaI	CTAG	2 cut(s)	17, 95
BfuAI	ACCTGC	1 cut(s)	72
BisI	GCNGC	2 cut(s)	76, 79
BlsI	GCNGC	2 cut(s)	77, 80
BmsI	GCATC	1 cut(s)	2
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	185, 263
Bse3DI	GCAATG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	185, 263
BseXI	GCAGC	2 cut(s)	87, 90
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	192, 270
BspMI	ACCTGC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	185, 263
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	2 cut(s)	192, 270
BssT1I	CCWWGG	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	17
BstKTI	GATC	2 cut(s)	195, 273
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	2 cut(s)	192, 270
BstNSI	RCATGY	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	87, 90
BstV2I	GAAGAC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	2 cut(s)	41, 225
CviKI_1	RGCY	2 cut(s)	41, 225
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	2 cut(s)	194, 272
DpnII	GATC	2 cut(s)	192, 270
DraI	TTTAAA	1 cut(s)	136
DrdI	GACNNNNNNGTC	1 cut(s)	99
DseDI	GACNNNNNNGTC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	1 cut(s)	75
FaiI	YATR	2 cut(s)	73, 131
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	76, 79
FokI	GGATG	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	76, 79
FspBI	CTAG	2 cut(s)	17, 95
GluI	GCNGC	2 cut(s)	76, 79
GsuI	CTGGAG	1 cut(s)	280
Hin1II	CATG	1 cut(s)	75
Hpy188I	TCNGA	2 cut(s)	253, 275
HpyAV	CCTTC	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	71, 75, 239
HpyF3I	CTNAG	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	192, 270
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	3 cut(s)	67, 198, 244
Lsp1109I	GCAGC	2 cut(s)	87, 90
LweI	GCATC	1 cut(s)	2
MaeI	CTAG	2 cut(s)	17, 95
MalI	GATC	2 cut(s)	194, 272
MboI	GATC	2 cut(s)	192, 270
MboII	GAAGA	3 cut(s)	134, 178, 266
MfeI	CAATTG	1 cut(s)	206
MluCI	AATT	1 cut(s)	206
MnlI	CCTC	4 cut(s)	46, 57, 211, 255
MseI	TTAA	2 cut(s)	135, 283
MunI	CAATTG	1 cut(s)	206
NdeII	GATC	2 cut(s)	192, 270
NlaIII	CATG	1 cut(s)	75
NspI	RCATGY	1 cut(s)	75
PaeI	GCATGC	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	77, 80
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	135, 283
SatI	GCNGC	2 cut(s)	76, 79
Sau3AI	GATC	2 cut(s)	192, 270
SetI	ASST	2 cut(s)	43, 86
SfaNI	GCATC	1 cut(s)	2
SgeI	CNNG	9 cut(s)	29, 84, 94, 107, 130, 159, 197, 208, 271
SpeI	ACTAGT	1 cut(s)	94
SphI	GCATGC	1 cut(s)	75
Sse9I	AATT	1 cut(s)	206
SspI	AATATT	1 cut(s)	33
SspMI	CTAG	2 cut(s)	17, 95
StyI	CCWWGG	1 cut(s)	146
TaqI	TCGA	1 cut(s)	44
TasI	AATT	1 cut(s)	206
Tru1I	TTAA	2 cut(s)	135, 283
Tru9I	TTAA	2 cut(s)	135, 283
TseI	GCWGC	2 cut(s)	75, 78
TspDTI	ATGAA	1 cut(s)	257
XceI	RCATGY	1 cut(s)	75
XspI	CTAG	2 cut(s)	17, 95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.