Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015744

Physical Location & Seq

Genomic Coordinates Forward (+)

46545519 .. 46550101

Gene Structure 4583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45839

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAATTGGGCTGTCAATCTGAAGCCAATGTCAAACAAGGCAACTTGTTCTACGTTATTTCTAACAGGTGGTACTCAAGCCTCTAAAAGAGATGTAGGGGTTATTGTTCAACAATTCAGATCTGACATTGACTTCCAGGAATTTTGCTTGCAAGTGTTACTTGAATGTGTAAGCAAGGACATGCCTGCTCTTTTACAGGATCTAAGATCTTTCTCCGTTGCCTCTAACGAGGATCTAAGAGCTCGTTTCGGATCTCGTTCTGTGCTGTGGAATAATGGATACTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0010252 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0042592 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC1 PC_rep

Protein Analysis

95

Amino Acids

10.65

Weight (kDa)

7.7

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APC1_C	PF18122	40 - 76	1.7e-06	Anaphase-promoting complex sub unit 1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015744)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496051
rosa_roxburghii	Rroxscaffold_3G00226590
rosa_rugosa	Rorug01G0124200 Rorug01G0124300 Rorug01G0124400 Rorug01G0124500 Rorug04G0063100 Rorug04G0063200
rosa_samantha	Rh1BG050400 Rh1CG069700 Rh1DG074300 Rh3AG326100 Rh3CG358500 Rh4DG083200 Rh6CG201700
rosa_wichuraiana	Rw3G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	207, 240, 259
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	110, 164
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw21I	GWGCWC	1 cut(s)	244
AlwI	GGATC	3 cut(s)	207, 240, 259
ApoI	RAATTY	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	137
BciVI	GTATCC	1 cut(s)	272
BfuI	GTATCC	1 cut(s)	272
BglII	AGATCT	2 cut(s)	119, 206
Bme1390I	CCNGG	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	5 cut(s)	119, 199, 206, 232, 251
BspPI	GGATC	3 cut(s)	207, 240, 259
BssMI	GATC	5 cut(s)	119, 199, 206, 232, 251
Bst2UI	CCWGG	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	149, 186
BstDEI	CTNAG	2 cut(s)	203, 236
BstKTI	GATC	5 cut(s)	122, 202, 209, 235, 254
BstMBI	GATC	5 cut(s)	119, 199, 206, 232, 251
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	135
BstX2I	RGATCY	5 cut(s)	119, 199, 206, 232, 251
BstYI	RGATCY	5 cut(s)	119, 199, 206, 232, 251
BsuI	GTATCC	1 cut(s)	272
Cac8I	GCNNGC	2 cut(s)	149, 186
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	4 cut(s)	11, 25, 80, 242
CviKI_1	RGCY	4 cut(s)	11, 25, 80, 242
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	2 cut(s)	203, 236
DpnI	GATC	5 cut(s)	121, 201, 208, 234, 253
DpnII	GATC	5 cut(s)	119, 199, 206, 232, 251
Ecl136II	GAGCTC	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	1 cut(s)	184
FaiI	YATR	1 cut(s)	182
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	1 cut(s)	180
FriOI	GRGCYC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	184
Hpy188I	TCNGA	4 cut(s)	21, 119, 124, 251
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	1 cut(s)	151
HpyF3I	CTNAG	2 cut(s)	203, 236
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	119, 199, 206, 232, 251
LpnPI	CCDG	5 cut(s)	51, 122, 149, 182, 198
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	5 cut(s)	121, 201, 208, 234, 253
MboI	GATC	5 cut(s)	119, 199, 206, 232, 251
MflI	RGATCY	5 cut(s)	119, 199, 206, 232, 251
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	4, 113, 140
MnlI	CCTC	3 cut(s)	91, 223, 232
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
NdeII	GATC	5 cut(s)	119, 199, 206, 232, 251
NlaIII	CATG	1 cut(s)	184
NspI	RCATGY	1 cut(s)	184
PfoI	TCCNGGA	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PsuI	RGATCY	5 cut(s)	119, 199, 206, 232, 251
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	244
Sau3AI	GATC	5 cut(s)	119, 199, 206, 232, 251
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	3 cut(s)	56, 70, 244
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	4, 113, 140
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	135
TaiI	ACGT	1 cut(s)	56
TasI	AATT	3 cut(s)	4, 113, 140
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	205
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.