Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015744

Physical Location & Seq

Genomic Coordinates Reverse (-)

13694187 .. 13698411

Gene Structure 4225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG074300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTGGTATTGCTTATATTTGCATAAGAGGTCTTGTGTGAAAATTAAAGTCGGACAATCTCAAGGGGGAATTGTACTTGGTGGTACTCAAGCCTCTAAAAGAGATGTAGGGGTTATTGTTCAACAATTCAGATCTGACATTGACTTCCAAGAATTTTGCTTGCAAGTGTTATTTGAATGTGTGAGCAAGGACAGACCTGCTCTTTTACAGGTACCCACAAAGTCTCTCTCTTTTTTCTTTTCCTTTTTTTGGTACCATAGAGGTGTAGTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0010252 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0042592 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC1 PC_rep

Protein Analysis

91

Amino Acids

10.5

Weight (kDa)

9.27

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APC1_C	PF18122	44 - 71	1.3e-06	Anaphase-promoting complex sub unit 1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015744)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496051
rosa_roxburghii	Rroxscaffold_3G00226590
rosa_rugosa	Rorug01G0124200 Rorug01G0124300 Rorug01G0124400 Rorug01G0124500 Rorug04G0063100 Rorug04G0063200
rosa_samantha	Rh1BG050400 Rh1CG069700 Rh1DG074300 Rh3AG326100 Rh3CG358500 Rh4DG083200 Rh6CG201700
rosa_wichuraiana	Rw3G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	205
Acc65I	GGTACC	2 cut(s)	211, 252
AccB1I	GGYRCC	2 cut(s)	211, 252
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	4 cut(s)	75, 85, 213, 254
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	2 cut(s)	122, 176
Alw26I	GTCTC	1 cut(s)	228
ApoI	RAATTY	1 cut(s)	152
Asp718I	GGTACC	2 cut(s)	211, 252
BanI	GGYRCC	2 cut(s)	211, 252
BcoDI	GTCTC	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	205
BglII	AGATCT	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	213, 254
BpuEI	CTTGAG	2 cut(s)	45, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	249
BshNI	GGYRCC	2 cut(s)	211, 252
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	213, 254
BspMI	ACCTGC	1 cut(s)	205
BspT107I	GGYRCC	2 cut(s)	211, 252
BssMI	GATC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	161
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	161
Csp6I	GTAC	4 cut(s)	74, 84, 212, 253
CviJI	RGCY	1 cut(s)	92
CviKI_1	RGCY	1 cut(s)	92
CviQI	GTAC	4 cut(s)	74, 84, 212, 253
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
FaiI	YATR	4 cut(s)	16, 24, 258, 274
Hpy188I	TCNGA	3 cut(s)	53, 131, 136
HpyCH4V	TGCA	2 cut(s)	22, 163
KpnI	GGTACC	2 cut(s)	215, 256
Kzo9I	GATC	1 cut(s)	131
LpnPI	CCDG	2 cut(s)	194, 210
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MflI	RGATCY	1 cut(s)	131
MluCI	AATT	4 cut(s)	42, 69, 125, 152
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	3 cut(s)	21, 103, 254
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	261
NdeII	GATC	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	213, 254
PspN4I	GGNNCC	2 cut(s)	213, 254
PsuI	RGATCY	1 cut(s)	131
RsaI	GTAC	4 cut(s)	75, 85, 213, 254
RsaNI	GTAC	4 cut(s)	74, 84, 212, 253
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	131
SetI	ASST	4 cut(s)	32, 199, 213, 265
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	60, 87
SmoI	CTYRAG	2 cut(s)	60, 87
Sse9I	AATT	4 cut(s)	42, 69, 125, 152
TasI	AATT	4 cut(s)	42, 69, 125, 152
TatI	WGTACW	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
XapI	RAATTY	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.