Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0015744

Physical Location & Seq

Genomic Coordinates Reverse (-)

14457603 .. 14461827

Gene Structure 4225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG069700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGGTTCCAAGGATCCTGCTCTGGTGGTTGACAACGTTAAGAGGGCAAAGCAGGTGCCGGTGGACTGGTCTTGTGTGAAAATTAAAGTCGGACAATCTCAAGGGGGAATTGTACTTGGTGGTACTCAAGCCTCTAAAAGAGATGTAGGGGTTATTGTTCAACAATTCAGATCTGACATTGACTTCCAAGAATTTTGCTTGCAAGTGTTATTTGAATGTGTGAGCAAGGACAGACCTGCTCTTTTACAGGTACCCACAAAGTCTCTCTCTTTTTTCTTTTCCTTTTTTTGGTACCATAGAGGTGTAGTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0010252 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0042592 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC1 PC_rep

Protein Analysis

104

Amino Acids

11.64

Weight (kDa)

9.18

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APC1_C	PF18122	57 - 84	1.9e-06	Anaphase-promoting complex sub unit 1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015744)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496051
rosa_roxburghii	Rroxscaffold_3G00226590
rosa_rugosa	Rorug01G0124200 Rorug01G0124300 Rorug01G0124400 Rorug01G0124500 Rorug04G0063100 Rorug04G0063200
rosa_samantha	Rh1BG050400 Rh1CG069700 Rh1DG074300 Rh3AG326100 Rh3CG358500 Rh4DG083200 Rh6CG201700
rosa_wichuraiana	Rw3G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	2 cut(s)	43, 244
Acc65I	GGTACC	2 cut(s)	250, 291
AccB1I	GGYRCC	3 cut(s)	55, 250, 291
AclI	AACGTT	1 cut(s)	36
AclWI	GGATC	2 cut(s)	8, 21
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	4 cut(s)	114, 124, 252, 293
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	161, 215
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	8, 21
ApoI	RAATTY	1 cut(s)	191
Asp718I	GGTACC	2 cut(s)	250, 291
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	3 cut(s)	55, 250, 291
BcoDI	GTCTC	1 cut(s)	267
BfuAI	ACCTGC	2 cut(s)	43, 244
BglII	AGATCT	1 cut(s)	170
BmiI	GGNNCC	5 cut(s)	7, 15, 57, 252, 293
BpuEI	CTTGAG	2 cut(s)	84, 111
BsaJI	CCNNGG	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	71
BshNI	GGYRCC	3 cut(s)	55, 250, 291
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmAI	GTCTC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	13, 170
BspLI	GGNNCC	5 cut(s)	7, 15, 57, 252, 293
BspMI	ACCTGC	2 cut(s)	43, 244
BspPI	GGATC	2 cut(s)	8, 21
BspT107I	GGYRCC	3 cut(s)	55, 250, 291
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	2 cut(s)	13, 170
BssT1I	CCWWGG	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	200
BstKTI	GATC	2 cut(s)	16, 173
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	13, 170
BstX2I	RGATCY	2 cut(s)	13, 170
BstYI	RGATCY	2 cut(s)	13, 170
BveI	ACCTGC	2 cut(s)	43, 244
Cac8I	GCNNGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	58
Csp6I	GTAC	4 cut(s)	113, 123, 251, 292
CviJI	RGCY	1 cut(s)	131
CviKI_1	RGCY	1 cut(s)	131
CviQI	GTAC	4 cut(s)	113, 123, 251, 292
DpnI	GATC	2 cut(s)	15, 172
DpnII	GATC	2 cut(s)	13, 170
Eco130I	CCWWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaiI	YATR	2 cut(s)	297, 313
HapII	CCGG	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	59
Hpy166II	GTNNAC	2 cut(s)	31, 64
Hpy188I	TCNGA	3 cut(s)	92, 170, 175
Hpy8I	GTNNAC	2 cut(s)	31, 64
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	202
HpySE526I	ACGT	1 cut(s)	36
KpnI	GGTACC	2 cut(s)	254, 295
Kzo9I	GATC	2 cut(s)	13, 170
LpnPI	CCDG	7 cut(s)	8, 30, 38, 52, 72, 233, 249
MaeII	ACGT	1 cut(s)	36
MalI	GATC	2 cut(s)	15, 172
MboI	GATC	2 cut(s)	13, 170
MflI	RGATCY	2 cut(s)	13, 170
MluCI	AATT	4 cut(s)	81, 108, 164, 191
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	3 cut(s)	36, 142, 293
MseI	TTAA	2 cut(s)	39, 84
MslI	CAYNNNNRTG	1 cut(s)	300
MspI	CCGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	13, 170
NlaIV	GGNNCC	5 cut(s)	7, 15, 57, 252, 293
PaqCI	CACCTGC	1 cut(s)	43
Psp1406I	AACGTT	1 cut(s)	36
PspN4I	GGNNCC	5 cut(s)	7, 15, 57, 252, 293
PsuI	RGATCY	2 cut(s)	13, 170
RsaI	GTAC	4 cut(s)	114, 124, 252, 293
RsaNI	GTAC	4 cut(s)	113, 123, 251, 292
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	39, 84
Sau3AI	GATC	2 cut(s)	13, 170
SetI	ASST	5 cut(s)	39, 57, 238, 252, 304
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	99, 126
SmoI	CTYRAG	2 cut(s)	99, 126
Sse9I	AATT	4 cut(s)	81, 108, 164, 191
StyI	CCWWGG	1 cut(s)	9
TaiI	ACGT	1 cut(s)	39
TasI	AATT	4 cut(s)	81, 108, 164, 191
TatI	WGTACW	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	39, 84
Tru9I	TTAA	2 cut(s)	39, 84
XapI	RAATTY	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.