Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0015744

Physical Location & Seq

Genomic Coordinates Forward (+)

42780084 .. 42782176

Gene Structure 2093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G028550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCAAGAGGGGTCTACAGTTACTACATTGTGGATGAAGATCGAAATGTTCTCCGATGGGAGATGGGAAGCAAGCGTCGGCTTCTTTTGCCTCAGGCCATTCGGGAAGGAGAGCTGCTTCACTTCCATGACTTTTGGCAGGTACTTTCTCGCTTTTACCATATGCTATTGCTCAGAATCTTTCTTTTCCATATGTTATTGCTTGCTATCTTACGACACAAAGTAGACGCCGTCCGGAACGTGTCAAAAAGACTTCAACCCCTTAATGTTGGCGTTGGTGCCCGCCCAGATGAAGATGAAGATGAAGTTGTACACCTGCCCACGCCCCTGTTGATATATGTCTTAAGAGTTGAGCCCCAAATCGGAATCAGGGTCCAGCACGGCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000025 GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0004133 GO:0004134 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0010297 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0030246 GO:0030247 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0055114 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

CBM_20 Glyco_hydro_77

Protein Analysis

129

Amino Acids

15.32

Weight (kDa)

9.15

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015744)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496051
rosa_roxburghii	Rroxscaffold_3G00226590
rosa_rugosa	Rorug01G0124200 Rorug01G0124300 Rorug01G0124400 Rorug01G0124500 Rorug04G0063100 Rorug04G0063200
rosa_samantha	Rh1BG050400 Rh1CG069700 Rh1DG074300 Rh3AG326100 Rh3CG358500 Rh4DG083200 Rh6CG201700
rosa_wichuraiana	Rw3G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	324
Acc36I	ACCTGC	2 cut(s)	130, 324
AccB1I	GGYRCC	1 cut(s)	278
AccI	GTMKAC	2 cut(s)	15, 225
AccIII	TCCGGA	1 cut(s)	234
AciI	CCGC	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	382
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	2 cut(s)	144, 312
AfiI	CCNNNNNNNGG	1 cut(s)	362
AflII	CTTAAG	1 cut(s)	343
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	234
AoxI	GGCC	2 cut(s)	96, 382
ApeKI	GCWGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	373
AxyI	CCTNAGG	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	2 cut(s)	51, 58
BceAI	ACGGC	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	16
BfrI	CTTAAG	1 cut(s)	343
BfuAI	ACCTGC	2 cut(s)	130, 324
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	2 cut(s)	280, 374
BsaBI	GATNNNNATC	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse21I	CCTNAGG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	234
BseGI	GGATG	1 cut(s)	40
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMII	CTCAG	2 cut(s)	107, 187
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	102
BshFI	GGCC	2 cut(s)	98, 384
BshNI	GGYRCC	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	362
BsnI	GGCC	2 cut(s)	98, 384
Bsp1286I	GDGCHC	2 cut(s)	283, 357
Bsp13I	TCCGGA	1 cut(s)	234
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	2 cut(s)	98, 384
BspCNI	CTCAG	2 cut(s)	106, 186
BspEI	TCCGGA	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	280, 374
BspMI	ACCTGC	2 cut(s)	130, 324
BspT107I	GGYRCC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	343
BsrGI	TGTACA	1 cut(s)	310
BssMI	GATC	1 cut(s)	40
BssNI	GRCGYC	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	228
BstAFI	CTTAAG	1 cut(s)	343
BstAUI	TGTACA	1 cut(s)	310
BstC8I	GCNNGC	3 cut(s)	74, 204, 283
BstDEI	CTNAG	2 cut(s)	93, 173
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	102
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	98, 384
BtsCI	GGATG	1 cut(s)	40
BveI	ACCTGC	2 cut(s)	130, 324
Cac8I	GCNNGC	3 cut(s)	74, 204, 283
Cfr13I	GGNCC	1 cut(s)	373
CseI	GACGC	2 cut(s)	65, 236
Csp6I	GTAC	2 cut(s)	143, 311
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	5 cut(s)	82, 98, 115, 355, 384
CviKI_1	RGCY	5 cut(s)	82, 98, 115, 355, 384
CviQI	GTAC	2 cut(s)	143, 311
DdeI	CTNAG	2 cut(s)	93, 173
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	373
Eco81I	CCTNAGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	357
FaeI	CATG	1 cut(s)	131
FaiI	YATR	7 cut(s)	129, 162, 164, 192, 194, 337, 339
FatI	CATG	1 cut(s)	127
FauI	CCCGC	1 cut(s)	290
FauNDI	CATATG	2 cut(s)	162, 192
FblI	GTMKAC	2 cut(s)	15, 225
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	98, 384
HapII	CCGG	1 cut(s)	235
HgaI	GACGC	2 cut(s)	65, 236
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	131
HinfI	GANTC	2 cut(s)	177, 366
HpaII	CCGG	1 cut(s)	235
Hpy166II	GTNNAC	3 cut(s)	16, 226, 313
Hpy188I	TCNGA	3 cut(s)	56, 176, 365
Hpy188III	TCNNGA	3 cut(s)	6, 104, 235
Hpy8I	GTNNAC	3 cut(s)	16, 226, 313
Hpy99I	CGWCG	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	2 cut(s)	93, 173
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	40
LpnPI	CCDG	7 cut(s)	80, 125, 248, 300, 329, 341, 355
Lsp1109I	GCAGC	1 cut(s)	102
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	3 cut(s)	50, 305, 311
MhlI	GDGCHC	2 cut(s)	283, 357
MnlI	CCTC	1 cut(s)	102
MroI	TCCGGA	1 cut(s)	234
MseI	TTAA	2 cut(s)	264, 344
MslI	CAYNNNNRTG	1 cut(s)	126
MspCI	CTTAAG	1 cut(s)	343
MspI	CCGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeI	CATATG	2 cut(s)	162, 192
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	280, 374
PaqCI	CACCTGC	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	177, 366
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	280, 374
PspPI	GGNCC	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	2 cut(s)	144, 312
RsaNI	GTAC	2 cut(s)	143, 311
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	264, 344
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	373
SduI	GDGCHC	2 cut(s)	283, 357
SetI	ASST	4 cut(s)	117, 144, 243, 318
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SsiI	CCGC	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	43
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	2 cut(s)	177, 366
Tru1I	TTAA	2 cut(s)	264, 344
Tru9I	TTAA	2 cut(s)	264, 344
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	4 cut(s)	51, 306, 312, 318
Tth111I	GACNNNGTC	1 cut(s)	230
Vha464I	CTTAAG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	373
XmiI	GTMKAC	2 cut(s)	15, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.