Rorug01G0124500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015744
Physical Location & Seq
Forward (+)
21394319 .. 21396074
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0124500.1

Sequence Viewer

Length: 1392 bp
ATGGCAAATTCAAACTCAGTGAAAGTAGTTGAGGTTTGTAAGGTGGCTCCGCTTCCAAGCTCACCGGACTCAATCACATCAGAACAGTACCCTTTAACCTTATTTGATCTACTCTGGTTAAGGTTTTTACCTGTTGAACCCGTTTATTTCTATGAAATACCTCCCACCTCTAACCCCCATATCTTCTATGATTCCATACTTCCCAAACTAAAAGCCTCCCTCTCTCTTACCCTCCAACACTTTCTCCCTCTCGCCGGAAACCTAACTTGGCCCCAACACTCCCCCAAACCCATTCTCAGCTACGTCCATGGCGACTCAGTTTCACTTACAGTAGCCGAATCCAATGCCGATAATTTTCCCCACCTTTCGAGTAATGACTTTGTTGAAGCCAAGGACTACCATCCTCTTATTCCCCTACTGGAAGTTGCTGATGAACGAGCCGCGGCCATGGCAATACAAATCACTCTGTTCCGAAACCGTGGCTTTTCCATTGGAACGACGATGCACCATGCCGTCCTGGACGGCAAAAACTCATGCTCGTTTTTCAAAGCATGGGCTCACATATGCAAACAAGAAACTGGAATCGGATCATCATCTTCTTCTATTTCACTACCGGATAACCTCAACCCATTTCACGACCGAATGGCCATCCACGACCCAAAGGGGCTCGGAGAACTCTACTCGAATGAGTACCTCAACCAGGGAGGACCGAACAACAGGAGTGTGACGCATAGCCGCCCACCTAAAGCTCTTCCCCAAGACCTAGTTCGAGGGACCTTCGATTTCACACGAGCAAATATTCAAACTCTTAGAGAGCATGTTGTGAAGACAACAAGGGTTGCTGATTTATCATCACTTCATTTGTCCACTTTTTCTCTAGGGTGTGCTTACACATGGATTTGCTTAGTCAAGGCCGAAGAAATAAAGGGAGAGAAGACGGCTATGATCTTCGGCGTGGACGCAAGGTCTCGCTTGGACCCTCCTGTACCGGACACCTATTTTGGAAACTGCGTAGTGGGCCGTGTAGCAGTGGCAGAAACGAAAGGCCTAAGCGGTGAAGATGGGTTGGTCGTGGCCGTAAAGGCAATCACTGAGGCTTTGAGGAGTTTGGACGACGGGGTTTTCAATGGGGCTGAGCTTTGGGTTTCAAAATTTCTCGACTTTTCTCTGTATGATAAGGTATATTCGATTGCGGGTTCACAGCGGTTTGAGGTTTACGGTACTGATTATGGATGGGGAAGACCAAGGAAGATCGAGCTCGTTTCGATAGATAAGACTGATGCGGTTTCTCTTATGGATAGCAAGAATGGTGGTGGAGCTGTTGAGGTTGGGTTGGCTTTGAAGAAACCACAAATGGAGGTTTTTGCATCTCTATTTGCGAAAGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

463

Amino Acids

50.87

Weight (kDa)

6.07

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 25 - 457 1e-44 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 443
AciI CCGC 8 cut(s) 50, 441, 443, 736, 1053, 1193, 1204, 1283
AclWI GGATC 1 cut(s) 595
AcoI YGGCCR 3 cut(s) 444, 645, 1074
AcsI RAATTY 2 cut(s) 7, 1151
AfaI GTAC 4 cut(s) 89, 692, 987, 1222
AfiI CCNNNNNNNGG 2 cut(s) 254, 700
AgsI TTSAA 8 cut(s) 12, 137, 386, 547, 803, 1126, 1149, 1342
AhdI GACNNNNNGTC 1 cut(s) 964
AjnI CCWGG 2 cut(s) 516, 699
AjuI GAANNNNNNNTTGG 4 cut(s) 250, 282, 750, 782
AluBI AGCT 6 cut(s) 60, 300, 749, 1138, 1258, 1319
AluI AGCT 6 cut(s) 60, 300, 749, 1138, 1258, 1319
Alw21I GWGCWC 1 cut(s) 1260
Alw26I GTCTC 1 cut(s) 972
AlwI GGATC 1 cut(s) 595
AoxI GGCC 7 cut(s) 269, 444, 645, 912, 1018, 1045, 1074
ApoI RAATTY 2 cut(s) 7, 1151
ArsI GACNNNNNNTTYG 2 cut(s) 983, 1015
Asp700I GAANNNNTTC 1 cut(s) 1385
AspS9I GGNCC 5 cut(s) 270, 707, 774, 976, 1018
AsuHPI GGTGA 2 cut(s) 54, 1067
AvaII GGWCC 3 cut(s) 707, 774, 976
BalI TGGCCA 1 cut(s) 647
BanII GRGCYC 3 cut(s) 559, 669, 1260
BauI CACGAG 1 cut(s) 789
BbsI GAAGAC 3 cut(s) 833, 941, 1246
Bbv12I GWGCWC 1 cut(s) 1260
BccI CCATC 4 cut(s) 408, 656, 1055, 1227
BceAI ACGGC 5 cut(s) 497, 538, 954, 1005, 1061
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciT130I CCWGG 2 cut(s) 518, 701
BcoDI GTCTC 1 cut(s) 972
BfaI CTAG 2 cut(s) 764, 878
BglI GCCNNNNNGGC 1 cut(s) 1082
BisI GCNGC 3 cut(s) 441, 444, 736
BlpI GCTNAGC 1 cut(s) 1134
BlsI GCNGC 3 cut(s) 442, 445, 737
Bme1390I CCNGG 2 cut(s) 518, 701
Bme18I GGWCC 3 cut(s) 707, 774, 976
BmeRI GACNNNNNGTC 1 cut(s) 964
BmgT120I GGNCC 5 cut(s) 270, 707, 774, 976, 1018
BmiI GGNNCC 4 cut(s) 48, 272, 775, 978
BmrFI CCNGG 2 cut(s) 518, 701
BmsI GCATC 3 cut(s) 492, 1270, 1376
BpiI GAAGAC 3 cut(s) 833, 941, 1246
Bpu10I CCTNAGC 1 cut(s) 1049
Bpu1102I GCTNAGC 1 cut(s) 1134
BsaBI GATNNNNATC 1 cut(s) 592
BsaI GGTCTC 1 cut(s) 972
BsaJI CCNNGG 7 cut(s) 307, 390, 441, 447, 478, 700, 1244
BsaWI WCCGGW 3 cut(s) 64, 613, 988
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 700
Bse1I ACTGG 2 cut(s) 423, 583
Bse8I GATNNNNATC 1 cut(s) 592
BseBI CCWGG 2 cut(s) 518, 701
BseDI CCNNGG 7 cut(s) 307, 390, 441, 447, 478, 700, 1244
BseGI GGATG 3 cut(s) 400, 648, 1238
BseJI GATNNNNATC 1 cut(s) 592
BseLI CCNNNNNNNGG 2 cut(s) 254, 700
BseMII CTCAG 5 cut(s) 30, 310, 330, 1083, 1125
BseNI ACTGG 2 cut(s) 423, 583
BseRI GAGGAG 1 cut(s) 1117
Bsh1236I CGCG 1 cut(s) 443
Bsh1285I CGRYCG 1 cut(s) 640
BshFI GGCC 7 cut(s) 271, 446, 647, 914, 1020, 1047, 1076
BsiEI CGRYCG 1 cut(s) 640
BsiHKAI GWGCWC 1 cut(s) 1260
BsiSI CCGG 4 cut(s) 65, 255, 614, 989
BslFI GGGAC 1 cut(s) 787
BslI CCNNNNNNNGG 2 cut(s) 254, 700
BsmAI GTCTC 1 cut(s) 972
BsmFI GGGAC 1 cut(s) 787
BsnI GGCC 7 cut(s) 271, 446, 647, 914, 1020, 1047, 1076
Bso31I GGTCTC 1 cut(s) 972
Bsp1286I GDGCHC 3 cut(s) 559, 669, 1260
Bsp143I GATC 4 cut(s) 106, 587, 945, 1251
Bsp1720I GCTNAGC 1 cut(s) 1134
Bsp19I CCATGG 2 cut(s) 307, 447
BspACI CCGC 8 cut(s) 50, 441, 443, 736, 1053, 1193, 1204, 1283
BspANI GGCC 7 cut(s) 271, 446, 647, 914, 1020, 1047, 1076
BspCNI CTCAG 5 cut(s) 29, 309, 329, 1084, 1126
BspFNI CGCG 1 cut(s) 443
BspLI GGNNCC 4 cut(s) 48, 272, 775, 978
BspPI GGATC 1 cut(s) 595
BspQI GCTCTTC 1 cut(s) 756
BspTNI GGTCTC 1 cut(s) 972
BsrI ACTGG 2 cut(s) 423, 583
BssECI CCNNGG 7 cut(s) 307, 390, 441, 447, 478, 700, 1244
BssMI GATC 4 cut(s) 106, 587, 945, 1251
BssSI CACGAG 1 cut(s) 789
BssT1I CCWWGG 4 cut(s) 307, 390, 447, 1244
Bst2BI CACGAG 1 cut(s) 789
Bst2UI CCWGG 2 cut(s) 518, 701
Bst4CI ACNGT 4 cut(s) 87, 331, 479, 1220
Bst6I CTCTTC 1 cut(s) 756
BstDEI CTNAG 8 cut(s) 16, 296, 316, 809, 904, 1049, 1092, 1134
BstDSI CCRYGG 4 cut(s) 307, 441, 447, 478
BstENI CCTNNNNNAGG 1 cut(s) 698
BstF5I GGATG 3 cut(s) 400, 648, 1238
BstFNI CGCG 1 cut(s) 443
BstKTI GATC 4 cut(s) 109, 590, 948, 1254
BstMAI GTCTC 1 cut(s) 972
BstMBI GATC 4 cut(s) 106, 587, 945, 1251
BstMCI CGRYCG 1 cut(s) 640
BstMWI GCNNNNNNNGC 3 cut(s) 449, 1017, 1082
BstNI CCWGG 2 cut(s) 518, 701
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 2 cut(s) 516, 699
BstUI CGCG 1 cut(s) 443
BstV2I GAAGAC 3 cut(s) 833, 941, 1246
BsuRI GGCC 7 cut(s) 271, 446, 647, 914, 1020, 1047, 1076
BtgI CCRYGG 4 cut(s) 307, 441, 447, 478
BtsCI GGATG 3 cut(s) 400, 648, 1238
BtsI GCAGTG 1 cut(s) 1035
BtsIMutI CAGTG 3 cut(s) 24, 1035, 1089
Cfr13I GGNCC 5 cut(s) 270, 707, 774, 976, 1018
Cfr42I CCGCGG 1 cut(s) 444
CseI GACGC 2 cut(s) 736, 968
Csp6I GTAC 4 cut(s) 88, 691, 986, 1221
CspCI CAANNNNNGTGG 2 cut(s) 1291, 1326
CviAII CATG 7 cut(s) 308, 448, 509, 534, 552, 818, 894
CviQI GTAC 4 cut(s) 88, 691, 986, 1221
DdeI CTNAG 8 cut(s) 16, 296, 316, 809, 904, 1049, 1092, 1134
DpnI GATC 4 cut(s) 108, 589, 947, 1253
DpnII GATC 4 cut(s) 106, 587, 945, 1251
DriI GACNNNNNGTC 1 cut(s) 964
EaeI YGGCCR 3 cut(s) 444, 645, 1074
Eam1104I CTCTTC 1 cut(s) 756
Eam1105I GACNNNNNGTC 1 cut(s) 964
EarI CTCTTC 1 cut(s) 756
Ecl136II GAGCTC 1 cut(s) 1258
Eco130I CCWWGG 4 cut(s) 307, 390, 447, 1244
Eco147I AGGCCT 1 cut(s) 1047
Eco24I GRGCYC 3 cut(s) 559, 669, 1260
Eco31I GGTCTC 1 cut(s) 972
Eco47I GGWCC 3 cut(s) 707, 774, 976
Eco53kI GAGCTC 1 cut(s) 1258
EcoICRI GAGCTC 1 cut(s) 1258
EcoNI CCTNNNNNAGG 1 cut(s) 698
EcoO109I RGGNCCY 1 cut(s) 774
EcoRII CCWGG 2 cut(s) 516, 699
EcoT14I CCWWGG 4 cut(s) 307, 390, 447, 1244
EcoT38I GRGCYC 3 cut(s) 559, 669, 1260
ErhI CCWWGG 4 cut(s) 307, 390, 447, 1244
FaeI CATG 7 cut(s) 311, 451, 512, 537, 555, 821, 897
FaqI GGGAC 1 cut(s) 787
FatI CATG 7 cut(s) 307, 447, 508, 533, 551, 817, 893
FauI CCCGC 1 cut(s) 1186
FauNDI CATATG 1 cut(s) 563
Fnu4HI GCNGC 3 cut(s) 441, 444, 736
FokI GGATG 3 cut(s) 387, 635, 1245
FriOI GRGCYC 3 cut(s) 559, 669, 1260
Fsp4HI GCNGC 3 cut(s) 441, 444, 736
FspBI CTAG 2 cut(s) 764, 878
GluI GCNGC 3 cut(s) 441, 444, 736
HaeIII GGCC 7 cut(s) 271, 446, 647, 914, 1020, 1047, 1076
HapII CCGG 4 cut(s) 65, 255, 614, 989
HgaI GACGC 2 cut(s) 736, 968
Hin1II CATG 7 cut(s) 311, 451, 512, 537, 555, 821, 897
HinfI GANTC 5 cut(s) 68, 191, 314, 338, 582
HpaII CCGG 4 cut(s) 65, 255, 614, 989
HphI GGTGA 2 cut(s) 54, 1067
Hpy166II GTNNAC 4 cut(s) 867, 958, 1199, 1216
Hpy188I TCNGA 5 cut(s) 82, 473, 587, 671, 1391
Hpy188III TCNNGA 2 cut(s) 635, 1157
Hpy8I GTNNAC 4 cut(s) 867, 958, 1199, 1216
Hpy99I CGWCG 2 cut(s) 502, 1118
HpyAV CCTTC 1 cut(s) 787
HpyCH4III ACNGT 4 cut(s) 87, 331, 479, 1220
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 3 cut(s) 505, 567, 1367
HpyF10VI GCNNNNNNNGC 3 cut(s) 449, 1017, 1082
HpyF3I CTNAG 8 cut(s) 16, 296, 316, 809, 904, 1049, 1092, 1134
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 7 cut(s) 311, 451, 512, 537, 555, 821, 897
KspI CCGCGG 1 cut(s) 444
Kzo9I GATC 4 cut(s) 106, 587, 945, 1251
LguI GCTCTTC 1 cut(s) 756
LmnI GCTCC 2 cut(s) 52, 1316
LweI GCATC 3 cut(s) 492, 1270, 1376
MaeI CTAG 2 cut(s) 764, 878
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 724
MalI GATC 4 cut(s) 108, 589, 947, 1253
MboI GATC 4 cut(s) 106, 587, 945, 1251
MhlI GDGCHC 3 cut(s) 559, 669, 1260
MlsI TGGCCA 1 cut(s) 647
MluCI AATT 3 cut(s) 7, 352, 1151
MluNI TGGCCA 1 cut(s) 647
MlyI GAGTC 2 cut(s) 62, 308
MmeI TCCRAC 1 cut(s) 259
Mox20I TGGCCA 1 cut(s) 647
MroXI GAANNNNTTC 1 cut(s) 1385
MscI TGGCCA 1 cut(s) 647
MseI TTAA 2 cut(s) 95, 119
Msp20I TGGCCA 1 cut(s) 647
MspA1I CMGCKG 2 cut(s) 443, 1204
MspI CCGG 4 cut(s) 65, 255, 614, 989
MspR9I CCNGG 2 cut(s) 518, 701
MvaI CCWGG 2 cut(s) 518, 701
MvnI CGCG 1 cut(s) 443
MwoI GCNNNNNNNGC 3 cut(s) 449, 1017, 1082
NcoI CCATGG 2 cut(s) 307, 447
NdeI CATATG 1 cut(s) 563
NdeII GATC 4 cut(s) 106, 587, 945, 1251
NlaIII CATG 7 cut(s) 311, 451, 512, 537, 555, 821, 897
NlaIV GGNNCC 4 cut(s) 48, 272, 775, 978
NmuCI GTSAC 1 cut(s) 724
NspI RCATGY 1 cut(s) 821
PceI AGGCCT 1 cut(s) 1047
PciSI GCTCTTC 1 cut(s) 756
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 1385
PfeI GAWTC 3 cut(s) 191, 338, 582
PfoI TCCNGGA 1 cut(s) 516
PkrI GCNGC 3 cut(s) 442, 445, 737
PleI GAGTC 2 cut(s) 62, 308
PpsI GAGTC 2 cut(s) 62, 308
PpuMI RGGWCCY 1 cut(s) 774
Psp124BI GAGCTC 1 cut(s) 1260
Psp5II RGGWCCY 1 cut(s) 774
Psp6I CCWGG 2 cut(s) 516, 699
PspGI CCWGG 2 cut(s) 516, 699
PspN4I GGNNCC 4 cut(s) 48, 272, 775, 978
PspPI GGNCC 5 cut(s) 270, 707, 774, 976, 1018
PspPPI RGGWCCY 1 cut(s) 774
RsaI GTAC 4 cut(s) 89, 692, 987, 1222
RsaNI GTAC 4 cut(s) 88, 691, 986, 1221
SacI GAGCTC 1 cut(s) 1260
SacII CCGCGG 1 cut(s) 444
SapI GCTCTTC 1 cut(s) 756
SaqAI TTAA 2 cut(s) 95, 119
SatI GCNGC 3 cut(s) 441, 444, 736
Sau3AI GATC 4 cut(s) 106, 587, 945, 1251
Sau96I GGNCC 5 cut(s) 270, 707, 774, 976, 1018
SchI GAGTC 2 cut(s) 62, 308
ScrFI CCNGG 2 cut(s) 518, 701
SduI GDGCHC 3 cut(s) 559, 669, 1260
SfaNI GCATC 3 cut(s) 492, 1270, 1376
Sfr303I CCGCGG 1 cut(s) 444
SgrBI CCGCGG 1 cut(s) 444
SinI GGWCC 3 cut(s) 707, 774, 976
Sse9I AATT 3 cut(s) 7, 352, 1151
SseBI AGGCCT 1 cut(s) 1047
SsiI CCGC 8 cut(s) 50, 441, 443, 736, 1053, 1193, 1204, 1283
SspI AATATT 1 cut(s) 799
SspMI CTAG 2 cut(s) 764, 878
SstI GAGCTC 1 cut(s) 1260
StuI AGGCCT 1 cut(s) 1047
StyD4I CCNGG 2 cut(s) 516, 699
StyI CCWWGG 4 cut(s) 307, 390, 447, 1244
TaaI ACNGT 4 cut(s) 87, 331, 479, 1220
TaiI ACGT 1 cut(s) 306
TaqI TCGA 8 cut(s) 368, 683, 769, 780, 1158, 1187, 1254, 1265
TaqII GACCGA 2 cut(s) 654, 724
TasI AATT 3 cut(s) 7, 352, 1151
TauI GCSGC 3 cut(s) 443, 446, 738
TfiI GAWTC 3 cut(s) 191, 338, 582
Tru1I TTAA 2 cut(s) 95, 119
Tru9I TTAA 2 cut(s) 95, 119
TscAI CASTG 3 cut(s) 24, 1035, 1096
TseFI GTSAC 1 cut(s) 724
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 3 cut(s) 168, 447, 848
TspRI CASTG 3 cut(s) 24, 1035, 1096
VpaK11BI GGWCC 3 cut(s) 707, 774, 976
XagI CCTNNNNNAGG 1 cut(s) 698
XapI RAATTY 2 cut(s) 7, 1151
XceI RCATGY 1 cut(s) 821
XmnI GAANNNNTTC 1 cut(s) 1385
XspI CTAG 2 cut(s) 764, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.