Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0015744

Physical Location & Seq

Genomic Coordinates Forward (+)

33592339 .. 33593796

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG201700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAATTGGGCGGTCAATCTGAAGCCAATGTCAAACAAGGCAACTTGTTCTATGTTATTTCTAACAGGTGGTACTCAAGCCTCTAAAAGAGATGTAGGGGTTATTGTTCAACAATTCAAATCTGACATTGACTTCCAGGAATTTTGCTTGCAAGTGTTATTTGAATGTGTGAGCAAGGACAGGCCTGCTCTTTTACAGGTCTATTTGATATGCTTTTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0010252 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0042592 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC1 PC_rep

Protein Analysis

74

Amino Acids

8.34

Weight (kDa)

7.63

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APC1_C	PF18122	40 - 72	6e-09	Anaphase-promoting complex sub unit 1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015744)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496051
rosa_roxburghii	Rroxscaffold_3G00226590
rosa_rugosa	Rorug01G0124200 Rorug01G0124300 Rorug01G0124400 Rorug01G0124500 Rorug04G0063100 Rorug04G0063200
rosa_samantha	Rh1BG050400 Rh1CG069700 Rh1DG074300 Rh3AG326100 Rh3CG358500 Rh4DG083200 Rh6CG201700
rosa_wichuraiana	Rw3G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	73
AgsI	TTSAA	3 cut(s)	110, 118, 164
AjnI	CCWGG	1 cut(s)	135
AoxI	GGCC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	149, 186
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	149, 186
Csp6I	GTAC	1 cut(s)	72
CviJI	RGCY	3 cut(s)	25, 80, 184
CviKI_1	RGCY	3 cut(s)	25, 80, 184
CviQI	GTAC	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	135
FaiI	YATR	2 cut(s)	53, 211
HaeIII	GGCC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	21, 124
Hpy188III	TCNNGA	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	151
LpnPI	CCDG	6 cut(s)	51, 122, 149, 166, 182, 198
MluCI	AATT	3 cut(s)	4, 113, 140
MnlI	CCTC	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
PceI	AGGCCT	1 cut(s)	184
PfoI	TCCNGGA	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	2 cut(s)	70, 201
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	4, 113, 140
SseBI	AGGCCT	1 cut(s)	184
SsiI	CCGC	1 cut(s)	11
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	135
TasI	AATT	3 cut(s)	4, 113, 140
TspDTI	ATGAA	2 cut(s)	17, 207
XapI	RAATTY	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.