Rh1BG050400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015744
Physical Location & Seq
Forward (+)
6924245 .. 6928319
4075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG050400.1

Sequence Viewer

Length: 282 bp
ATGGGTTCCAAGGATCCTGCTCCGGTGGTTGACAATGTTAAGAGGGCAAAGCAGGTGCCGGTGGACTGGTCTTGTGTGAAAATTAAAGTCGGACAGTATCAAGGGGGAATTGTACTTGGTATTAATAAATTGGAGGATAGATCTGTGTCTCGAACTAGCACGTCATGCACAAGCCAAAGCATTGCAGATTGGCATAGAGAGAGCTTGAACAACAACTTCAACTTCAGCTGTTACTTTGTAAGTTTGATGGATGAATTTGAATTTACCCATTCAGGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.39

Weight (kDa)

6.7

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 55
AclWI GGATC 2 cut(s) 8, 21
AcsI RAATTY 2 cut(s) 254, 260
AcuI CTGAAG 1 cut(s) 208
AfaI GTAC 1 cut(s) 114
AgsI TTSAA 3 cut(s) 208, 220, 260
AjiI CACGTC 1 cut(s) 162
AluBI AGCT 2 cut(s) 204, 228
AluI AGCT 2 cut(s) 204, 228
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 2 cut(s) 8, 21
ApoI RAATTY 2 cut(s) 254, 260
AseI ATTAAT 1 cut(s) 123
BamHI GGATCC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 55
BccI CCATC 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 43
BglII AGATCT 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 162
BmiI GGNNCC 3 cut(s) 7, 15, 57
BsaJI CCNNGG 1 cut(s) 9
BsaWI WCCGGW 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 55
BsiSI CCGG 2 cut(s) 23, 59
BsmAI GTCTC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 13, 140
BspLI GGNNCC 3 cut(s) 7, 15, 57
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 8, 21
BspT107I GGYRCC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 2 cut(s) 13, 140
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 165
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 2 cut(s) 16, 143
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 2 cut(s) 13, 140
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 13, 140
BstYI RGATCY 2 cut(s) 13, 140
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 256
BveI ACCTGC 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 58
Csp6I GTAC 1 cut(s) 113
CviAII CATG 1 cut(s) 165
CviJI RGCY 3 cut(s) 174, 204, 228
CviKI_1 RGCY 3 cut(s) 174, 204, 228
CviQI GTAC 1 cut(s) 113
DpnI GATC 2 cut(s) 15, 142
DpnII GATC 2 cut(s) 13, 140
Eco130I CCWWGG 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 1 cut(s) 168
FaiI YATR 2 cut(s) 166, 195
FatI CATG 1 cut(s) 164
FokI GGATG 1 cut(s) 263
FspBI CTAG 1 cut(s) 156
HapII CCGG 2 cut(s) 23, 59
Hin1II CATG 1 cut(s) 168
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HpaII CCGG 2 cut(s) 23, 59
Hpy166II GTNNAC 2 cut(s) 31, 64
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 1 cut(s) 150
Hpy8I GTNNAC 2 cut(s) 31, 64
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 168, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 161
Hsp92II CATG 1 cut(s) 168
Kzo9I GATC 2 cut(s) 13, 140
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 6 cut(s) 30, 36, 38, 52, 72, 258
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 15, 142
MboI GATC 2 cut(s) 13, 140
MflI RGATCY 2 cut(s) 13, 140
MluCI AATT 5 cut(s) 81, 108, 128, 254, 260
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 2 cut(s) 36, 127
MseI TTAA 3 cut(s) 39, 84, 123
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 2 cut(s) 23, 59
MwoI GCNNNNNNNGC 1 cut(s) 165
NdeII GATC 2 cut(s) 13, 140
NlaIII CATG 1 cut(s) 168
NlaIV GGNNCC 3 cut(s) 7, 15, 57
PaqCI CACCTGC 1 cut(s) 43
PshBI ATTAAT 1 cut(s) 123
PspN4I GGNNCC 3 cut(s) 7, 15, 57
PsuI RGATCY 2 cut(s) 13, 140
PvuII CAGCTG 1 cut(s) 228
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 3 cut(s) 39, 84, 123
Sau3AI GATC 2 cut(s) 13, 140
SetI ASST 5 cut(s) 57, 164, 206, 230, 277
Sse9I AATT 5 cut(s) 81, 108, 128, 254, 260
SspMI CTAG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 151
TasI AATT 5 cut(s) 81, 108, 128, 254, 260
TatI WGTACW 1 cut(s) 112
Tru1I TTAA 3 cut(s) 39, 84, 123
Tru9I TTAA 3 cut(s) 39, 84, 123
TspDTI ATGAA 1 cut(s) 267
VspI ATTAAT 1 cut(s) 123
XapI RAATTY 2 cut(s) 254, 260
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.