Rorug01G0124200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015744
Physical Location & Seq
Reverse (-)
21349766 .. 21351268
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0124200.1

Sequence Viewer

Length: 1092 bp
ATGGCACCTTCTACGCGAAGACCTTCATCTCAAGCAGTAGCAATGGCCAAAAGAATGAGGGAAATTCAGCTGAGAGGGACAAGGTCTAGCAATACCAAGCGATCCAATGGAGCAACATCAAGGGGAACTTCAGTACAAGCTGCATCAAAGTTGTCATTGAAACGACAAAAGAGATTGAAGGGTAAAAGAGCTATGAAAAGGGAAGGACTGAAGTTGCTTAAACGAGGGTGTGTGACAATGTCTCGTATAGTGAGACGAAAAATAATTGGAAAGAGGATGACAGTTCAGTTCAACCAGAAAGGACAACCCATAGGGAAAGCTGGTAAAGAAATACAGTCATATATTGGGGTGTTAGCTCGCAAGAAGGTTCCAATCTCGATACCTACATGGAAGGATGTTTTAGTGGAACAAAAAAATAAAATCTGGGAAGGCATAAAGTTGTCATTTTTGTTGCGTCCAGAACACAAAAGAATGGTCTTAATCTCAGCAGGAGCAAAATGGAGAGAGTTCAAGAGTCATTTGACCACCCGCTACATTCTCCCACATAGAGATAACCTTGAAATTATCGAATCTCGACCAGAGGACTATCTTTTCATTAATCAAGATGACTGGGAGATTTTTGTACAAGATAGGTTATCTGACTCATTTCTAGAACTCCATGAGAAACAAAAAAGAAAACGAGCCTTAAGTAAGTATCCTCATCGGCTGTCACGTAAAGGGTACGCTGGATTGGAGGAAGAACTGTCTGCAACTATGGATGAAGCTGAACTTGATCGTGCAACCATGTGGATCAAAGCACGTCAAGATAAGAATGGAGGATTTAAAGATCCTTTAGTAGAGGAGAAGGCCAAAGAAATTGCTGATTTGAAGAAAAAAGAGGCTGAGGGAGAGTTAAGCACTTCTGGTTCAGATGATGTGTTAACTTTAGCATTAGGAAATCCTGAGCATACTGGAATAATTAGAGGTGTAGGGGCAAATGTGAGGCAAGCTGCATACTTTAACCTCCCAAAACGCCGAAAGCAAAGTGTTGAACAGAGTCTTAGGTTAAGTGTTCAGAAAATAATGGAACAAGAAAGGGAGAAGATACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

41.64

Weight (kDa)

10.34

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 200 - 328 8e-11 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 16
AciI CCGC 1 cut(s) 529
AclWI GGATC 3 cut(s) 96, 797, 821
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 2 cut(s) 114, 230
AfaI GTAC 3 cut(s) 135, 624, 722
AflII CTTAAG 1 cut(s) 685
AgsI TTSAA 7 cut(s) 160, 178, 292, 511, 560, 868, 1031
AjiI CACGTC 1 cut(s) 800
AluBI AGCT 7 cut(s) 70, 140, 191, 320, 356, 764, 989
AluI AGCT 7 cut(s) 70, 140, 191, 320, 356, 764, 989
Alw26I GTCTC 2 cut(s) 246, 247
AlwI GGATC 3 cut(s) 96, 797, 821
AoxI GGCC 2 cut(s) 45, 846
ApeKI GCWGC 2 cut(s) 140, 989
ApoI RAATTY 1 cut(s) 63
ArsI GACNNNNNNTTYG 2 cut(s) 459, 491
AseI ATTAAT 1 cut(s) 597
Asp700I GAANNNNTTC 1 cut(s) 22
BalI TGGCCA 1 cut(s) 47
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 25
BbvCI CCTCAGC 1 cut(s) 882
BbvI GCAGC 2 cut(s) 127, 976
BciVI GTATCC 1 cut(s) 705
BcoDI GTCTC 2 cut(s) 246, 247
BfaI CTAG 2 cut(s) 87, 650
BfrI CTTAAG 1 cut(s) 685
BfuI GTATCC 1 cut(s) 705
BisI GCNGC 2 cut(s) 141, 990
BlsI GCNGC 2 cut(s) 142, 991
BmgBI CACGTC 1 cut(s) 800
BmiI GGNNCC 2 cut(s) 6, 369
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 1 cut(s) 152
BmuI ACTGGG 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 25
Bpu10I CCTNAGC 2 cut(s) 882, 942
BpuEI CTTGAG 1 cut(s) 15
BsaAI YACGTR 1 cut(s) 713
Bse1I ACTGG 2 cut(s) 614, 955
Bse3DI GCAATG 1 cut(s) 48
BseGI GGATG 3 cut(s) 282, 400, 763
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 4 cut(s) 62, 498, 873, 933
BseNI ACTGG 2 cut(s) 614, 955
BseRI GAGGAG 1 cut(s) 854
BseXI GCAGC 2 cut(s) 127, 976
Bsh1236I CGCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 47, 848
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 1 cut(s) 91
BsmAI GTCTC 2 cut(s) 246, 247
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 91
BsnI GGCC 2 cut(s) 47, 848
Bsp1407I TGTACA 1 cut(s) 622
Bsp143I GATC 4 cut(s) 101, 772, 789, 826
BspACI CCGC 1 cut(s) 529
BspANI GGCC 2 cut(s) 47, 848
BspCNI CTCAG 4 cut(s) 63, 497, 874, 934
BspFNI CGCG 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 6, 369
BspPI GGATC 3 cut(s) 96, 797, 821
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 685
BsrDI GCAATG 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 622
BsrI ACTGG 2 cut(s) 614, 955
BssMI GATC 4 cut(s) 101, 772, 789, 826
Bst4CI ACNGT 4 cut(s) 283, 336, 744, 1089
BstAFI CTTAAG 1 cut(s) 685
BstAUI TGTACA 1 cut(s) 622
BstBAI YACGTR 1 cut(s) 713
BstC8I GCNNGC 2 cut(s) 358, 987
BstDEI CTNAG 5 cut(s) 71, 484, 882, 942, 1040
BstF5I GGATG 3 cut(s) 282, 400, 763
BstFNI CGCG 1 cut(s) 16
BstKTI GATC 4 cut(s) 104, 775, 792, 829
BstMAI GTCTC 2 cut(s) 246, 247
BstMBI GATC 4 cut(s) 101, 772, 789, 826
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 127, 976
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 826
BstYI RGATCY 1 cut(s) 826
BsuI GTATCC 1 cut(s) 705
BsuRI GGCC 2 cut(s) 47, 848
BtrI CACGTC 1 cut(s) 800
BtsCI GGATG 3 cut(s) 282, 400, 763
Cac8I GCNNGC 2 cut(s) 358, 987
CseI GACGC 1 cut(s) 443
Csp6I GTAC 3 cut(s) 134, 623, 721
CviAII CATG 3 cut(s) 387, 659, 784
CviQI GTAC 3 cut(s) 134, 623, 721
DdeI CTNAG 5 cut(s) 71, 484, 882, 942, 1040
DpnI GATC 4 cut(s) 103, 774, 791, 828
DpnII GATC 4 cut(s) 101, 772, 789, 826
DraI TTTAAA 1 cut(s) 823
EaeI YGGCCR 1 cut(s) 45
Eco57I CTGAAG 2 cut(s) 114, 230
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 3 cut(s) 390, 662, 787
FalI AAGNNNNNCTT 4 cut(s) 112, 144, 753, 785
FaqI GGGAC 1 cut(s) 91
FatI CATG 3 cut(s) 386, 658, 783
FauI CCCGC 1 cut(s) 536
Fnu4HI GCNGC 2 cut(s) 141, 990
FokI GGATG 3 cut(s) 289, 407, 770
Fsp4HI GCNGC 2 cut(s) 141, 990
FspBI CTAG 2 cut(s) 87, 650
GluI GCNGC 2 cut(s) 141, 990
HaeIII GGCC 2 cut(s) 47, 848
HgaI GACGC 1 cut(s) 443
Hin1II CATG 3 cut(s) 390, 662, 787
HincII GTYRAC 1 cut(s) 921
HindII GTYRAC 1 cut(s) 921
HinfI GANTC 4 cut(s) 514, 569, 641, 1036
HpaI GTTAAC 1 cut(s) 921
Hpy166II GTNNAC 1 cut(s) 921
Hpy188I TCNGA 3 cut(s) 640, 910, 1056
Hpy188III TCNNGA 8 cut(s) 376, 458, 511, 573, 602, 650, 803, 941
Hpy8I GTNNAC 1 cut(s) 921
HpyAV CCTTC 8 cut(s) 18, 33, 172, 197, 358, 385, 422, 838
HpyCH4III ACNGT 4 cut(s) 283, 336, 744, 1089
HpyCH4IV ACGT 2 cut(s) 712, 799
HpyCH4V TGCA 4 cut(s) 143, 749, 779, 992
HpyF3I CTNAG 5 cut(s) 71, 484, 882, 942, 1040
HpySE526I ACGT 2 cut(s) 712, 799
Hsp92II CATG 3 cut(s) 390, 662, 787
KspAI GTTAAC 1 cut(s) 921
Kzo9I GATC 4 cut(s) 101, 772, 789, 826
LmnI GCTCC 2 cut(s) 110, 491
Lsp1109I GCAGC 2 cut(s) 127, 976
LweI GCATC 1 cut(s) 152
MaeI CTAG 2 cut(s) 87, 650
MaeII ACGT 2 cut(s) 712, 799
MaeIII GTNAC 2 cut(s) 232, 708
MalI GATC 4 cut(s) 103, 774, 791, 828
MboI GATC 4 cut(s) 101, 772, 789, 826
MboII GAAGA 3 cut(s) 30, 749, 880
MflI RGATCY 1 cut(s) 826
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 5 cut(s) 63, 264, 561, 855, 957
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 3 cut(s) 523, 635, 1045
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 22
MscI TGGCCA 1 cut(s) 47
MseI TTAA 9 cut(s) 219, 479, 597, 686, 822, 893, 920, 999, 1046
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 70
MspCI CTTAAG 1 cut(s) 685
MvnI CGCG 1 cut(s) 16
NdeII GATC 4 cut(s) 101, 772, 789, 826
NlaIII CATG 3 cut(s) 390, 662, 787
NlaIV GGNNCC 2 cut(s) 6, 369
NmuCI GTSAC 2 cut(s) 232, 708
PcsI WCGNNNNNNNCGW 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 569
PflFI GACNNNGTC 2 cut(s) 82, 238
PkrI GCNGC 2 cut(s) 142, 991
PleI GAGTC 3 cut(s) 522, 635, 1044
PpsI GAGTC 3 cut(s) 522, 635, 1044
Ppu21I YACGTR 1 cut(s) 713
PshBI ATTAAT 1 cut(s) 597
PspN4I GGNNCC 2 cut(s) 6, 369
PsuI RGATCY 1 cut(s) 826
PsyI GACNNNGTC 2 cut(s) 82, 238
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 3 cut(s) 135, 624, 722
RsaNI GTAC 3 cut(s) 134, 623, 721
SaqAI TTAA 9 cut(s) 219, 479, 597, 686, 822, 893, 920, 999, 1046
SatI GCNGC 2 cut(s) 141, 990
Sau3AI GATC 4 cut(s) 101, 772, 789, 826
SchI GAGTC 3 cut(s) 523, 635, 1045
SfaNI GCATC 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 30, 685
SmoI CTYRAG 2 cut(s) 30, 685
Sse9I AATT 5 cut(s) 63, 264, 561, 855, 957
SsiI CCGC 1 cut(s) 529
SspMI CTAG 2 cut(s) 87, 650
TaaI ACNGT 4 cut(s) 283, 336, 744, 1089
TaiI ACGT 2 cut(s) 715, 802
TaqI TCGA 3 cut(s) 377, 567, 574
TasI AATT 5 cut(s) 63, 264, 561, 855, 957
TatI WGTACW 2 cut(s) 133, 622
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 9 cut(s) 219, 479, 597, 686, 822, 893, 920, 999, 1046
Tru9I TTAA 9 cut(s) 219, 479, 597, 686, 822, 893, 920, 999, 1046
TseFI GTSAC 2 cut(s) 232, 708
TseI GCWGC 2 cut(s) 140, 989
Tsp45I GTSAC 2 cut(s) 232, 708
TspDTI ATGAA 4 cut(s) 15, 209, 583, 774
Tth111I GACNNNGTC 2 cut(s) 82, 238
Vha464I CTTAAG 1 cut(s) 685
VspI ATTAAT 1 cut(s) 597
XapI RAATTY 1 cut(s) 63
XbaI TCTAGA 1 cut(s) 649
XmnI GAANNNNTTC 1 cut(s) 22
XspI CTAG 2 cut(s) 87, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.