Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0015744

Physical Location & Seq

Genomic Coordinates Forward (+)

44319667 .. 44322074

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG358500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCAAGAGGGGTCTACAGTTACTACGTTGTGGATGATGATCGAAATGTTCTCCGATGGGAGATGGGAAGCAAGCGTCGGCTTCTTTTGCCTCAGGCCATTCAGGAAGGAGAGCTGCTTCACTTCCATGACTTTTGGCAGTCATCTTTTTTTGAGCAAAGAACTCAGAGTGGCCAGTATTTGGAAGAAGACACTGCAGGACTCTGTTGGCTGAAATTCTCTGCAATCAGAAAAAGTGGGGATGTAAAGCAACATAAGAATGTGGTTCCATACATGTACTTGGTGGAATTCTCTCCACTGGCTGCCCAATTTTGGTTGAGGTTTCCGAGTGGGAAGTTGAAAAGCTTAAAACTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000025 GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0004133 GO:0004134 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0010297 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0030246 GO:0030247 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0055114 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

CBM_20 Glyco_hydro_77

Protein Analysis

119

Amino Acids

14.08

Weight (kDa)

9.07

Isoelectric Point (pI)

61.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015744)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496051
rosa_roxburghii	Rroxscaffold_3G00226590
rosa_rugosa	Rorug01G0124200 Rorug01G0124300 Rorug01G0124400 Rorug01G0124500 Rorug04G0063100 Rorug04G0063200
rosa_samantha	Rh1BG050400 Rh1CG069700 Rh1DG074300 Rh3AG326100 Rh3CG358500 Rh4DG083200 Rh6CG201700
rosa_wichuraiana	Rw3G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	2 cut(s)	215, 287
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	181, 312
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	340
AluBI	AGCT	2 cut(s)	115, 345
AluI	AGCT	2 cut(s)	115, 345
AoxI	GGCC	2 cut(s)	96, 172
ApeKI	GCWGC	2 cut(s)	115, 302
ApoI	RAATTY	2 cut(s)	215, 287
AxyI	CCTNAGG	1 cut(s)	93
BalI	TGGCCA	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	102, 289
BccI	CCATC	2 cut(s)	51, 58
BfmI	CTRYAG	2 cut(s)	16, 195
BisI	GCNGC	2 cut(s)	116, 303
BlsI	GCNGC	2 cut(s)	117, 304
BmiI	GGNNCC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 312
Bse1I	ACTGG	2 cut(s)	175, 303
Bse21I	CCTNAGG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	39
BseGI	GGATG	2 cut(s)	40, 247
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	2 cut(s)	181, 312
BseMII	CTCAG	2 cut(s)	107, 179
BseNI	ACTGG	2 cut(s)	175, 303
BseXI	GCAGC	2 cut(s)	102, 289
BshFI	GGCC	2 cut(s)	98, 174
BslI	CCNNNNNNNGG	2 cut(s)	181, 312
BsnI	GGCC	2 cut(s)	98, 174
Bsp143I	GATC	1 cut(s)	40
BspANI	GGCC	2 cut(s)	98, 174
BspCNI	CTCAG	2 cut(s)	106, 178
BspLI	GGNNCC	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	175, 303
BssMI	GATC	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	93, 165
BstF5I	GGATG	2 cut(s)	40, 247
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	277
BstSFI	CTRYAG	2 cut(s)	16, 195
BstV1I	GCAGC	2 cut(s)	102, 289
BstV2I	GAAGAC	1 cut(s)	195
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	98, 174
BtsCI	GGATG	2 cut(s)	40, 247
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 296
Cac8I	GCNNGC	1 cut(s)	74
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	2 cut(s)	128, 274
CviJI	RGCY	7 cut(s)	82, 98, 115, 174, 211, 302, 345
CviKI_1	RGCY	7 cut(s)	82, 98, 115, 174, 211, 302, 345
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	2 cut(s)	93, 165
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	172
Eco81I	CCTNAGG	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	287
FaeI	CATG	2 cut(s)	131, 277
FaiI	YATR	4 cut(s)	129, 255, 271, 275
FatI	CATG	2 cut(s)	127, 273
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	116, 303
FokI	GGATG	2 cut(s)	47, 254
Fsp4HI	GCNGC	2 cut(s)	116, 303
GluI	GCNGC	2 cut(s)	116, 303
HaeIII	GGCC	2 cut(s)	98, 174
HgaI	GACGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	131, 277
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	1 cut(s)	201
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	4 cut(s)	56, 168, 230, 327
Hpy188III	TCNNGA	2 cut(s)	6, 104
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	197, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	2 cut(s)	93, 165
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	131, 277
Kzo9I	GATC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	80, 89, 183, 188, 284
Lsp1109I	GCAGC	2 cut(s)	102, 289
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	197, 200
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	3 cut(s)	215, 287, 308
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	2 cut(s)	102, 312
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	2 cut(s)	347, 358
MslI	CAYNNNNRTG	2 cut(s)	126, 258
Msp20I	TGGCCA	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	2 cut(s)	131, 277
NlaIV	GGNNCC	1 cut(s)	267
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	117, 304
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PscI	ACATGT	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	126, 258
SaqAI	TTAA	2 cut(s)	347, 358
SatI	GCNGC	2 cut(s)	116, 303
Sau3AI	GATC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	195
SetI	ASST	4 cut(s)	30, 117, 323, 347
SfcI	CTRYAG	2 cut(s)	16, 195
SmiMI	CAYNNNNRTG	2 cut(s)	126, 258
Sse9I	AATT	3 cut(s)	215, 287, 308
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	43
TasI	AATT	3 cut(s)	215, 287, 308
TatI	WGTACW	1 cut(s)	276
Tru1I	TTAA	2 cut(s)	347, 358
Tru9I	TTAA	2 cut(s)	347, 358
TscAI	CASTG	2 cut(s)	199, 303
TseI	GCWGC	2 cut(s)	115, 302
TspRI	CASTG	2 cut(s)	199, 303
Van91I	CCANNNNNTGG	1 cut(s)	181
XapI	RAATTY	2 cut(s)	215, 287
XceI	RCATGY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.