Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0015744

Physical Location & Seq

Genomic Coordinates Forward (+)

46204284 .. 46228095

Gene Structure 23812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG326100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGACTACTCAGACTTGTAGGCTGCGGATATGGAAAAAATTTTCCAATCAGGCAAGTTGTCATTGTTTGGAAGTCCATTGTGGGACGGAAATATTGTTGCCGATCAGATTTGGATTAGAAATCCTCTTGGAAAGGGTGTGGGGGATCATGGGTTCCAAGGATCCTGCTCTGGTGGTTGACAACGTTAAGAGGGCAAAGCAGGTGCCGGTGGACTGGTCTTGTGTGAAAATTAAAGTCGGACAATATCAAGGGGGAATTGTACTTGGTATTAATAAAATAATGCATAAGCAAAAGACCATTGAGACAACCGACACTACAAATCCTAGATCAATGATGCAATCATCTTTTTTTGAGCAAAGAACTCAGAGTGACCAGTATTTGGAAGAAGACACTGCAGGACTCTGTTGGCTGAAATTCTCTGCAATCAGAAAAAGCGGGGATGTAAAGCAACATAAGAATGTGGTTCCATACATGTACTCGGTGGAATTCTCTCCACTGGCTGTCCAATTTTGGTTGAGGTTTCCGAGTGGGAATTTGAAAAGCTTAAAACTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

21.21

Weight (kDa)

9.37

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015744)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496051
rosa_roxburghii	Rroxscaffold_3G00226590
rosa_rugosa	Rorug01G0124200 Rorug01G0124300 Rorug01G0124400 Rorug01G0124500 Rorug04G0063100 Rorug04G0063200
rosa_samantha	Rh1BG050400 Rh1CG069700 Rh1DG074300 Rh3AG326100 Rh3CG358500 Rh4DG083200 Rh6CG201700
rosa_wichuraiana	Rw3G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	1 cut(s)	379
AciI	CCGC	2 cut(s)	25, 435
AclI	AACGTT	1 cut(s)	183
AclWI	GGATC	3 cut(s)	152, 155, 168
AcsI	RAATTY	4 cut(s)	38, 413, 485, 532
AfaI	GTAC	2 cut(s)	261, 476
AfiI	CCNNNNNNNGG	1 cut(s)	379
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	1 cut(s)	538
AloI	GAACNNNNNNTCC	2 cut(s)	136, 168
AluBI	AGCT	1 cut(s)	543
AluI	AGCT	1 cut(s)	543
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	3 cut(s)	152, 155, 168
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	4 cut(s)	38, 413, 485, 532
AseI	ATTAAT	1 cut(s)	270
BamHI	GGATCC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
BmiI	GGNNCC	4 cut(s)	154, 162, 204, 465
BmsI	GCATC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	3 cut(s)	218, 373, 501
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	2 cut(s)	23, 377
BseNI	ACTGG	3 cut(s)	218, 373, 501
BseXI	GCAGC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	97
Bsp143I	GATC	4 cut(s)	102, 144, 160, 326
BspACI	CCGC	2 cut(s)	25, 435
BspCNI	CTCAG	2 cut(s)	22, 376
BspLI	GGNNCC	4 cut(s)	154, 162, 204, 465
BspMAI	CTGCAG	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	3 cut(s)	152, 155, 168
BspT107I	GGYRCC	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	3 cut(s)	218, 373, 501
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	4 cut(s)	102, 144, 160, 326
BssT1I	CCWWGG	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	9, 363
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	4 cut(s)	105, 147, 163, 329
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	4 cut(s)	102, 144, 160, 326
BstNSI	RCATGY	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	9
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	445
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	390, 494
BveI	ACCTGC	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	205
Csp6I	GTAC	2 cut(s)	260, 475
CviAII	CATG	2 cut(s)	148, 472
CviJI	RGCY	4 cut(s)	22, 409, 500, 543
CviKI_1	RGCY	4 cut(s)	22, 409, 500, 543
CviQI	GTAC	2 cut(s)	260, 475
DdeI	CTNAG	2 cut(s)	9, 363
DpnI	GATC	4 cut(s)	104, 146, 162, 328
DpnII	GATC	4 cut(s)	102, 144, 160, 326
Eco130I	CCWWGG	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	151, 475
FaiI	YATR	6 cut(s)	31, 149, 285, 453, 469, 473
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	2 cut(s)	147, 471
FauI	CCCGC	1 cut(s)	428
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	1 cut(s)	23
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	2 cut(s)	151, 475
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	178, 211
Hpy188I	TCNGA	6 cut(s)	12, 107, 239, 366, 428, 525
Hpy8I	GTNNAC	2 cut(s)	178, 211
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	4 cut(s)	283, 337, 395, 422
HpyF3I	CTNAG	2 cut(s)	9, 363
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	151, 475
Kzo9I	GATC	4 cut(s)	102, 144, 160, 326
LpnPI	CCDG	9 cut(s)	35, 155, 177, 185, 199, 219, 381, 386, 482
Lsp1109I	GCAGC	1 cut(s)	9
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	4 cut(s)	104, 146, 162, 328
MboI	GATC	4 cut(s)	102, 144, 160, 326
MboII	GAAGA	2 cut(s)	395, 398
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	7 cut(s)	38, 228, 255, 413, 485, 506, 532
MlyI	GAGTC	1 cut(s)	393
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	3 cut(s)	134, 183, 510
Mph1103I	ATGCAT	1 cut(s)	285
MseI	TTAA	5 cut(s)	186, 231, 270, 545, 556
MslI	CAYNNNNRTG	1 cut(s)	456
MspI	CCGG	1 cut(s)	206
NdeII	GATC	4 cut(s)	102, 144, 160, 326
NlaIII	CATG	2 cut(s)	151, 475
NlaIV	GGNNCC	4 cut(s)	154, 162, 204, 465
NmuCI	GTSAC	1 cut(s)	368
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	1 cut(s)	475
PaqCI	CACCTGC	1 cut(s)	190
PciI	ACATGT	1 cut(s)	471
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	24
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
PscI	ACATGT	1 cut(s)	471
PshBI	ATTAAT	1 cut(s)	270
Psp1406I	AACGTT	1 cut(s)	183
PspN4I	GGNNCC	4 cut(s)	154, 162, 204, 465
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	2 cut(s)	261, 476
RsaNI	GTAC	2 cut(s)	260, 475
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	5 cut(s)	186, 231, 270, 545, 556
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	4 cut(s)	102, 144, 160, 326
SchI	GAGTC	1 cut(s)	393
SetI	ASST	4 cut(s)	186, 204, 521, 545
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	456
Sse9I	AATT	7 cut(s)	38, 228, 255, 413, 485, 506, 532
SsiI	CCGC	2 cut(s)	25, 435
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	156
TaiI	ACGT	1 cut(s)	186
TasI	AATT	7 cut(s)	38, 228, 255, 413, 485, 506, 532
TatI	WGTACW	2 cut(s)	259, 474
Tru1I	TTAA	5 cut(s)	186, 231, 270, 545, 556
Tru9I	TTAA	5 cut(s)	186, 231, 270, 545, 556
TscAI	CASTG	2 cut(s)	397, 501
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	368
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	397, 501
Van91I	CCANNNNNTGG	1 cut(s)	379
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	4 cut(s)	38, 413, 485, 532
XceI	RCATGY	1 cut(s)	475
XspI	CTAG	1 cut(s)	324
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.