Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014671

Physical Location & Seq

Genomic Coordinates Reverse (-)

9146885 .. 9147763

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGTCACCCAGTTGCGTTCCACATATGAACAAGAGAGTCATCCAGAGGAGTTCTTTATTCCATACTTGTGGCAGCTAGTACTATCCCGCTGTGGAATCAGTTTCAATCCTCGAGCCATAAATTTGTTTCCAGTTGATCAACCTTTCGAGAAACAGAGTGATTATGAAGTGGTGTCCGACAATCATGTAAATGGAGAGGTGGCAAAGCATGCAGTCTTTCTTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dymeclin

Protein Analysis

76

Amino Acids

8.85

Weight (kDa)

4.73

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33161 FvH4_4g01230
rosa_chinensis	RchiOBHm_Chr4g0393591 RchiOBHm_Chr4g0393611
rosa_laevigata	RLG00000009745 RLG00000009746
rosa_multiflora	Rmu_co8286683.1_g000001 Rmu_sc0000131.1_g000053 Rmu_sc0001089.1_g000030 Rmu_sc0001089.1_g000031 Rmu_sc0023155.1_g000001
rosa_samantha	Rh4BG044500 Rh4CG321200 Rh4CG321300 Rh4DG045100 Rh6AG189000
rosa_wichuraiana	Rw2G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	121
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
AlwI	GGATC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	85
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
BmcAI	AGTACT	1 cut(s)	81
BmeT110I	CYCGRG	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	10, 131
BseGI	GGATG	1 cut(s)	40
BseNI	ACTGG	2 cut(s)	10, 131
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	111
BsoBI	CYCGRG	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	136, 223
BspACI	CCGC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	10, 131
BssMI	GATC	2 cut(s)	136, 223
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	2 cut(s)	139, 226
BstMBI	GATC	2 cut(s)	136, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	4
BstV1I	GCAGC	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	2 cut(s)	185, 209
CviJI	RGCY	2 cut(s)	76, 116
CviKI_1	RGCY	2 cut(s)	76, 116
CviQI	GTAC	1 cut(s)	80
DpnI	GATC	2 cut(s)	138, 225
DpnII	GATC	2 cut(s)	136, 223
Eco88I	CYCGRG	1 cut(s)	111
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
FaeI	CATG	2 cut(s)	188, 212
FaiI	YATR	8 cut(s)	25, 27, 64, 119, 165, 186, 210, 229
FatI	CATG	2 cut(s)	184, 208
FauI	CCCGC	1 cut(s)	95
FauNDI	CATATG	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	188, 212
HinfI	GANTC	2 cut(s)	37, 96
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	3 cut(s)	44, 148, 221
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	188, 212
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	136, 223
LpnPI	CCDG	3 cut(s)	23, 57, 144
Lsp1109I	GCAGC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	138, 225
MboI	GATC	2 cut(s)	136, 223
MluCI	AATT	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	3 cut(s)	40, 120, 190
MslI	CAYNNNNRTG	2 cut(s)	67, 189
MspA1I	CMGCKG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	2 cut(s)	136, 223
NlaIII	CATG	2 cut(s)	188, 212
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	1 cut(s)	212
PaeI	GCATGC	1 cut(s)	212
PaeR7I	CTCGAG	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	75
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PspEI	GGTNACC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	111
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	2 cut(s)	67, 189
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	2 cut(s)	136, 223
ScaI	AGTACT	1 cut(s)	81
SchI	GAGTC	1 cut(s)	46
SetI	ASST	3 cut(s)	78, 145, 201
Sfr274I	CTCGAG	1 cut(s)	111
SlaI	CTCGAG	1 cut(s)	111
SmiMI	CAYNNNNRTG	2 cut(s)	67, 189
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	77
TaqI	TCGA	2 cut(s)	112, 147
TasI	AATT	1 cut(s)	121
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	42, 180
XapI	RAATTY	1 cut(s)	121
XceI	RCATGY	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	111
XspI	CTAG	1 cut(s)	77
ZrmI	AGTACT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.