Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001089.1

Orthogroup ID

OG0014671

Physical Location & Seq

Genomic Coordinates Reverse (-)

121444 .. 121779

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001089.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgaaacaagctctggacattgctgcacgagcactggtggaggttgtggaggccaggctcgccgttgaggaggctgctggagacactgaggaggctgaggaggccgctggagacactgaagaggctgctggagacactaaggaggcccccggagacactcaggaggctgaggaggccagggtcgccgttgtggaggccgctggagatactaaggaagctgaggagtccagggtagccgttgcggaggccgccagagacactgaggaggccagggtcgctgttactgtggccgccagagacactgaggaggctggagacattactatcgaacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.51

Weight (kDa)

4.05

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33161 FvH4_4g01230
rosa_chinensis	RchiOBHm_Chr4g0393591 RchiOBHm_Chr4g0393611
rosa_laevigata	RLG00000009745 RLG00000009746
rosa_multiflora	Rmu_co8286683.1_g000001 Rmu_sc0000131.1_g000053 Rmu_sc0001089.1_g000030 Rmu_sc0001089.1_g000031 Rmu_sc0023155.1_g000001
rosa_samantha	Rh4BG044500 Rh4CG321200 Rh4CG321300 Rh4DG045100 Rh6AG189000
rosa_wichuraiana	Rw2G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	105, 198, 242, 249, 291
AcoI	YGGCCR	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	138
AjnI	CCWGG	4 cut(s)	53, 176, 227, 269
AluBI	AGCT	2 cut(s)	11, 218
AluI	AGCT	2 cut(s)	11, 218
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	7 cut(s)	75, 105, 126, 147, 249, 291, 309
AoxI	GGCC	8 cut(s)	51, 102, 144, 174, 195, 246, 267, 288
ApeKI	GCWGC	3 cut(s)	23, 74, 125
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	150
BauI	CACGAG	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	34
BbvCI	CCTCAGC	3 cut(s)	96, 168, 219
BbvI	GCAGC	3 cut(s)	10, 61, 112
BceAI	ACGGC	3 cut(s)	47, 170, 221
BciT130I	CCWGG	4 cut(s)	55, 178, 229, 271
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	7 cut(s)	75, 105, 126, 147, 249, 291, 309
BisI	GCNGC	7 cut(s)	24, 75, 105, 126, 198, 249, 291
BlsI	GCNGC	7 cut(s)	25, 76, 106, 127, 199, 250, 292
Bme1390I	CCNGG	5 cut(s)	55, 150, 178, 229, 271
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	5 cut(s)	55, 150, 178, 229, 271
BpmI	CTGGAG	5 cut(s)	99, 129, 150, 222, 333
Bpu10I	CCTNAGC	3 cut(s)	96, 168, 219
BpuMI	CCSGG	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	148, 177, 228, 270
Bse1I	ACTGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	4 cut(s)	55, 178, 229, 271
BseDI	CCNNGG	4 cut(s)	148, 177, 228, 270
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	7 cut(s)	78, 87, 159, 173, 210, 252, 294
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	7 cut(s)	83, 104, 113, 185, 236, 278, 320
BseXI	GCAGC	3 cut(s)	10, 61, 112
BsgI	GTGCAG	1 cut(s)	9
BshFI	GGCC	8 cut(s)	53, 104, 146, 176, 197, 248, 269, 290
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	150
BsmAI	GTCTC	7 cut(s)	75, 105, 126, 147, 249, 291, 309
BsnI	GGCC	8 cut(s)	53, 104, 146, 176, 197, 248, 269, 290
Bsp1286I	GDGCHC	1 cut(s)	34
BspACI	CCGC	5 cut(s)	105, 198, 242, 249, 291
BspANI	GGCC	8 cut(s)	53, 104, 146, 176, 197, 248, 269, 290
BspCNI	CTCAG	7 cut(s)	79, 88, 160, 172, 211, 253, 295
BspLI	GGNNCC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	4 cut(s)	148, 177, 228, 270
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	4 cut(s)	55, 178, 229, 271
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	9 cut(s)	87, 96, 138, 159, 168, 210, 219, 261, 303
BstMAI	GTCTC	7 cut(s)	75, 105, 126, 147, 249, 291, 309
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 59, 101, 173, 182, 248, 275
BstNI	CCWGG	4 cut(s)	55, 178, 229, 271
BstSCI	CCNGG	5 cut(s)	53, 148, 176, 227, 269
BstV1I	GCAGC	3 cut(s)	10, 61, 112
BsuRI	GGCC	8 cut(s)	53, 104, 146, 176, 197, 248, 269, 290
BtsIMutI	CAGTG	5 cut(s)	32, 84, 114, 258, 300
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	145
DdeI	CTNAG	9 cut(s)	87, 96, 138, 159, 168, 210, 219, 261, 303
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	4 cut(s)	53, 176, 227, 269
Fnu4HI	GCNGC	7 cut(s)	24, 75, 105, 126, 198, 249, 291
Fsp4HI	GCNGC	7 cut(s)	24, 75, 105, 126, 198, 249, 291
GluI	GCNGC	7 cut(s)	24, 75, 105, 126, 198, 249, 291
GsuI	CTGGAG	5 cut(s)	99, 129, 150, 222, 333
HaeIII	GGCC	8 cut(s)	53, 104, 146, 176, 197, 248, 269, 290
HapII	CCGG	1 cut(s)	150
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	150
Hpy188III	TCNNGA	2 cut(s)	14, 161
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 59, 101, 173, 182, 248, 275
HpyF3I	CTNAG	9 cut(s)	87, 96, 138, 159, 168, 210, 219, 261, 303
Lsp1109I	GCAGC	3 cut(s)	10, 61, 112
MaeIII	GTNAC	1 cut(s)	280
MboII	GAAGA	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	34
MlyI	GAGTC	1 cut(s)	233
MspA1I	CMGCKG	2 cut(s)	107, 200
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	5 cut(s)	55, 150, 178, 229, 271
MvaI	CCWGG	4 cut(s)	55, 178, 229, 271
MwoI	GCNNNNNNNGC	7 cut(s)	29, 59, 101, 173, 182, 248, 275
NciI	CCSGG	1 cut(s)	150
NlaIV	GGNNCC	1 cut(s)	147
PkrI	GCNGC	7 cut(s)	25, 76, 106, 127, 199, 250, 292
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
Psp6I	CCWGG	4 cut(s)	53, 176, 227, 269
PspGI	CCWGG	4 cut(s)	53, 176, 227, 269
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	145
SatI	GCNGC	7 cut(s)	24, 75, 105, 126, 198, 249, 291
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	5 cut(s)	55, 150, 178, 229, 271
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	3 cut(s)	13, 45, 220
SsiI	CCGC	5 cut(s)	105, 198, 242, 249, 291
StyD4I	CCNGG	5 cut(s)	53, 148, 176, 227, 269
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	327
TauI	GCSGC	4 cut(s)	107, 200, 251, 293
TscAI	CASTG	5 cut(s)	39, 91, 121, 265, 307
TseI	GCWGC	3 cut(s)	23, 74, 125
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	5 cut(s)	39, 91, 121, 265, 307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.