Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001089.1

Orthogroup ID

OG0014671

Physical Location & Seq

Genomic Coordinates Reverse (-)

122556 .. 127041

Gene Structure 4486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001089.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atgagaacctggatgctcttcgagttctctgcttcgattgaacctgagattacactgatttatgagaaagtgaaaggcttttgcaggaactgtggattgtttgaacacgatgctacgggctatgatggtttcctggtgaaagaaaaggagaagctgcatcgcatggctccggcggcagcattggctagtttgtcgttcgatgtcggtcaaccaaagttggattccactacaccgagcggcctaacggagaaatttgaaattttgttagacctagcttttacaaagtcactaaacgccctagtcgaagccaaatctcatctcccgccaccaaaagctctcaccctagtcgacggtgaccttcataatgttcgacggggtcggagcttccctcccgccatcaactcgtctccaggtaccaatcgctcttcattctcagttttcaatttcaaattctctcaaaagctcagatctctctctctctctctctctctcactcgcagcgtttctcagctcagctcagcttctctgtctttggttcccaagaagagcagctcccttcgattcctgcaatgcttctccgattctgattacagcaatgtctcaagtggtgaaggctcaagaagtcttttggctgactgcagtctccatgtgctacttatcttcactcattatcataaatgtgttgtgggcaacgagccaataacagataaaagtaatgacaccactacttcaaattcgcttttgaaagggagtagatatttttctgacaacccttactgcatggccttggaacatgcaacggatgttgaatttgattgtgtagatactgagggtaatgcacatagtggtccagttttgaggttaccctttgcttctctgttcgatacccttggaatgtacttgactgatgaggctgctgcacttttgctttctctttattgcaaggaaatgctgactttctggagtatgtcttggtgcaaactgatttggatacactgcttgaatgacactgactttgctgaattggaagaacttgagatggaggaaggaatggaggggctgtcttcacctcctctgcccaatgctatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dymeclin

Protein Analysis

363

Amino Acids

40.18

Weight (kDa)

5.33

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33161 FvH4_4g01230
rosa_chinensis	RchiOBHm_Chr4g0393591 RchiOBHm_Chr4g0393611
rosa_laevigata	RLG00000009745 RLG00000009746
rosa_multiflora	Rmu_co8286683.1_g000001 Rmu_sc0000131.1_g000053 Rmu_sc0001089.1_g000030 Rmu_sc0001089.1_g000031 Rmu_sc0023155.1_g000001
rosa_samantha	Rh4BG044500 Rh4CG321200 Rh4CG321300 Rh4DG045100 Rh6AG189000
rosa_wichuraiana	Rw2G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	413
AccBSI	CCGCTC	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	4 cut(s)	173, 237, 323, 393
AcsI	RAATTY	5 cut(s)	251, 258, 449, 733, 809
AdeI	CACNNNGTG	1 cut(s)	845
AfaI	GTAC	2 cut(s)	415, 899
AgsI	TTSAA	9 cut(s)	41, 104, 257, 442, 448, 732, 745, 809, 1003
AjnI	CCWGG	3 cut(s)	8, 132, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	205, 237
AluBI	AGCT	9 cut(s)	154, 275, 335, 384, 463, 511, 516, 521, 552
AluI	AGCT	9 cut(s)	154, 275, 335, 384, 463, 511, 516, 521, 552
Alw26I	GTCTC	3 cut(s)	411, 604, 647
AlwNI	CAGNNNCTG	1 cut(s)	90
AoxI	GGCC	2 cut(s)	238, 783
ApeKI	GCWGC	6 cut(s)	154, 176, 498, 549, 914, 917
ApoI	RAATTY	5 cut(s)	251, 258, 449, 733, 809
ArsI	GACNNNNNNTTYG	2 cut(s)	998, 1030
Asp718I	GGTACC	1 cut(s)	413
AspS9I	GGNCC	1 cut(s)	848
AsuHPI	GGTGA	5 cut(s)	148, 331, 365, 620, 1059
AvaII	GGWCC	1 cut(s)	848
BanI	GGYRCC	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	1056
BbvI	GCAGC	6 cut(s)	141, 188, 510, 561, 901, 904
BccI	CCATC	3 cut(s)	119, 404, 1033
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	3 cut(s)	10, 134, 411
BciVI	GTATCC	1 cut(s)	984
BcoDI	GTCTC	3 cut(s)	411, 604, 647
BfaI	CTAG	4 cut(s)	186, 272, 299, 344
BfmI	CTRYAG	1 cut(s)	637
BfuI	GTATCC	1 cut(s)	984
BglII	AGATCT	1 cut(s)	467
BisI	GCNGC	8 cut(s)	155, 174, 177, 238, 499, 550, 915, 918
BlpI	GCTNAGC	2 cut(s)	512, 517
BlsI	GCNGC	8 cut(s)	156, 175, 178, 239, 500, 551, 916, 919
Bme1390I	CCNGG	3 cut(s)	10, 134, 411
Bme18I	GGWCC	1 cut(s)	848
BmgT120I	GGNCC	1 cut(s)	848
BmiI	GGNNCC	3 cut(s)	168, 415, 537
BmrFI	CCNGG	3 cut(s)	10, 134, 411
BmsI	GCATC	3 cut(s)	3, 100, 166
BoxI	GACNNNNGTC	1 cut(s)	639
BpiI	GAAGAC	1 cut(s)	1056
BplI	GAGNNNNNCTC	2 cut(s)	373, 405
BpmI	CTGGAG	2 cut(s)	393, 982
Bpu1102I	GCTNAGC	2 cut(s)	512, 517
BpuEI	CTTGAG	3 cut(s)	586, 601, 1055
BsaJI	CCNNGG	2 cut(s)	786, 889
BsaXI	ACNNNNNCTCC	2 cut(s)	1046, 1076
Bse1I	ACTGG	1 cut(s)	851
Bse3DI	GCAATG	2 cut(s)	575, 601
BseBI	CCWGG	3 cut(s)	10, 134, 411
BseDI	CCNNGG	2 cut(s)	786, 889
BseGI	GGATG	2 cut(s)	18, 808
BseMI	GCAATG	2 cut(s)	575, 601
BseMII	CTCAG	7 cut(s)	36, 447, 478, 521, 526, 531, 819
BseNI	ACTGG	1 cut(s)	851
BseRI	GAGGAG	1 cut(s)	1062
BseXI	GCAGC	6 cut(s)	141, 188, 510, 561, 901, 904
BsgI	GTGCAG	1 cut(s)	903
BshFI	GGCC	2 cut(s)	240, 785
BshNI	GGYRCC	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	170
BsmAI	GTCTC	3 cut(s)	411, 604, 647
BsmBI	CGTCTC	1 cut(s)	411
BsnI	GGCC	2 cut(s)	240, 785
Bsp143I	GATC	1 cut(s)	467
Bsp1720I	GCTNAGC	2 cut(s)	512, 517
BspACI	CCGC	4 cut(s)	173, 237, 323, 393
BspANI	GGCC	2 cut(s)	240, 785
BspCNI	CTCAG	7 cut(s)	37, 446, 477, 520, 525, 530, 820
BspLI	GGNNCC	3 cut(s)	168, 415, 537
BspMAI	CTGCAG	1 cut(s)	641
BspQI	GCTCTTC	3 cut(s)	23, 430, 539
BspT107I	GGYRCC	1 cut(s)	413
BsrBI	CCGCTC	1 cut(s)	237
BsrDI	GCAATG	2 cut(s)	575, 601
BsrI	ACTGG	1 cut(s)	851
BssECI	CCNNGG	2 cut(s)	786, 889
BssMI	GATC	1 cut(s)	467
BssT1I	CCWWGG	2 cut(s)	786, 889
Bst2UI	CCWGG	3 cut(s)	10, 134, 411
Bst4CI	ACNGT	2 cut(s)	92, 353
Bst6I	CTCTTC	3 cut(s)	23, 430, 539
BstDEI	CTNAG	7 cut(s)	45, 433, 464, 507, 512, 517, 828
BstEII	GGTNACC	2 cut(s)	353, 861
BstF5I	GGATG	2 cut(s)	18, 808
BstKTI	GATC	1 cut(s)	470
BstMAI	GTCTC	3 cut(s)	411, 604, 647
BstMBI	GATC	1 cut(s)	467
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 182
BstNI	CCWGG	3 cut(s)	10, 134, 411
BstNSI	RCATGY	1 cut(s)	797
BstPAI	GACNNNNGTC	1 cut(s)	639
BstPI	GGTNACC	2 cut(s)	353, 861
BstSCI	CCNGG	3 cut(s)	8, 132, 409
BstSFI	CTRYAG	1 cut(s)	637
BstV1I	GCAGC	6 cut(s)	141, 188, 510, 561, 901, 904
BstV2I	GAAGAC	1 cut(s)	1056
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuI	GTATCC	1 cut(s)	984
BsuRI	GGCC	2 cut(s)	240, 785
BtgZI	GCGATG	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	18, 808
BtsI	GCAGTG	1 cut(s)	994
BtsIMutI	CAGTG	3 cut(s)	53, 994, 1008
CaiI	CAGNNNCTG	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	848
Csp6I	GTAC	2 cut(s)	414, 898
CviAII	CATG	4 cut(s)	163, 647, 781, 794
CviQI	GTAC	2 cut(s)	414, 898
DdeI	CTNAG	7 cut(s)	45, 433, 464, 507, 512, 517, 828
DpnI	GATC	1 cut(s)	469
DpnII	GATC	1 cut(s)	467
DraIII	CACNNNGTG	1 cut(s)	845
Eam1104I	CTCTTC	3 cut(s)	23, 430, 539
EarI	CTCTTC	3 cut(s)	23, 430, 539
Eco130I	CCWWGG	2 cut(s)	786, 889
Eco47I	GGWCC	1 cut(s)	848
Eco91I	GGTNACC	2 cut(s)	353, 861
EcoO65I	GGTNACC	2 cut(s)	353, 861
EcoRII	CCWGG	3 cut(s)	8, 132, 409
EcoT14I	CCWWGG	2 cut(s)	786, 889
ErhI	CCWWGG	2 cut(s)	786, 889
Esp3I	CGTCTC	1 cut(s)	411
FaeI	CATG	4 cut(s)	166, 650, 784, 797
FatI	CATG	4 cut(s)	162, 646, 780, 793
FauI	CCCGC	2 cut(s)	330, 400
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	8 cut(s)	155, 174, 177, 238, 499, 550, 915, 918
FokI	GGATG	2 cut(s)	25, 815
Fsp4HI	GCNGC	8 cut(s)	155, 174, 177, 238, 499, 550, 915, 918
FspBI	CTAG	4 cut(s)	186, 272, 299, 344
GluI	GCNGC	8 cut(s)	155, 174, 177, 238, 499, 550, 915, 918
GsuI	CTGGAG	2 cut(s)	393, 982
HaeIII	GGCC	2 cut(s)	240, 785
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	4 cut(s)	166, 650, 784, 797
HincII	GTYRAC	2 cut(s)	209, 349
HindII	GTYRAC	2 cut(s)	209, 349
HinfI	GANTC	3 cut(s)	221, 561, 581
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	5 cut(s)	148, 331, 365, 620, 1059
Hpy166II	GTNNAC	2 cut(s)	209, 349
Hpy188I	TCNGA	5 cut(s)	381, 467, 580, 586, 766
Hpy188III	TCNNGA	2 cut(s)	618, 961
Hpy8I	GTNNAC	2 cut(s)	209, 349
Hpy99I	CGWCG	2 cut(s)	353, 375
HpyAV	CCTTC	4 cut(s)	368, 566, 605, 1040
HpyCH4III	ACNGT	2 cut(s)	92, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 182
HpyF3I	CTNAG	7 cut(s)	45, 433, 464, 507, 512, 517, 828
Hsp92II	CATG	4 cut(s)	166, 650, 784, 797
KpnI	GGTACC	1 cut(s)	417
Kzo9I	GATC	1 cut(s)	467
LguI	GCTCTTC	3 cut(s)	23, 430, 539
LmnI	GCTCC	3 cut(s)	172, 381, 557
Lsp1109I	GCAGC	6 cut(s)	141, 188, 510, 561, 901, 904
LweI	GCATC	3 cut(s)	3, 100, 166
MaeI	CTAG	4 cut(s)	186, 272, 299, 344
MaeIII	GTNAC	3 cut(s)	285, 353, 861
MalI	GATC	1 cut(s)	469
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	1 cut(s)	467
MboII	GAAGA	6 cut(s)	10, 417, 556, 652, 1040, 1056
MflI	RGATCY	1 cut(s)	467
MluCI	AATT	7 cut(s)	251, 258, 442, 449, 733, 809, 1022
MmeI	TCCRAC	2 cut(s)	198, 359
MnlI	CCTC	8 cut(s)	399, 823, 852, 904, 1036, 1048, 1080, 1083
MseI	TTAA	1 cut(s)	1090
MslI	CAYNNNNRTG	1 cut(s)	678
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	3 cut(s)	10, 134, 411
MvaI	CCWGG	3 cut(s)	10, 134, 411
MwoI	GCNNNNNNNGC	2 cut(s)	173, 182
NdeII	GATC	1 cut(s)	467
NlaIII	CATG	4 cut(s)	166, 650, 784, 797
NlaIV	GGNNCC	3 cut(s)	168, 415, 537
NmuCI	GTSAC	2 cut(s)	285, 353
NspI	RCATGY	1 cut(s)	797
PciSI	GCTCTTC	3 cut(s)	23, 430, 539
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PfeI	GAWTC	3 cut(s)	221, 561, 581
PflFI	GACNNNGTC	1 cut(s)	375
PkrI	GCNGC	8 cut(s)	156, 175, 178, 239, 500, 551, 916, 919
PshAI	GACNNNNGTC	1 cut(s)	639
Psp6I	CCWGG	3 cut(s)	8, 132, 409
PspEI	GGTNACC	2 cut(s)	353, 861
PspGI	CCWGG	3 cut(s)	8, 132, 409
PspN4I	GGNNCC	3 cut(s)	168, 415, 537
PspPI	GGNCC	1 cut(s)	848
PstI	CTGCAG	1 cut(s)	641
PstNI	CAGNNNCTG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	467
PsyI	GACNNNGTC	1 cut(s)	375
RsaI	GTAC	2 cut(s)	415, 899
RsaNI	GTAC	2 cut(s)	414, 898
RseI	CAYNNNNRTG	1 cut(s)	678
SalI	GTCGAC	1 cut(s)	347
SapI	GCTCTTC	3 cut(s)	23, 430, 539
SaqAI	TTAA	1 cut(s)	1090
SatI	GCNGC	8 cut(s)	155, 174, 177, 238, 499, 550, 915, 918
Sau3AI	GATC	1 cut(s)	467
Sau96I	GGNCC	1 cut(s)	848
ScrFI	CCNGG	3 cut(s)	10, 134, 411
SfaNI	GCATC	3 cut(s)	3, 100, 166
SfcI	CTRYAG	1 cut(s)	637
SinI	GGWCC	1 cut(s)	848
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	3 cut(s)	601, 616, 1034
SmoI	CTYRAG	3 cut(s)	601, 616, 1034
Sse9I	AATT	7 cut(s)	251, 258, 442, 449, 733, 809, 1022
SsiI	CCGC	4 cut(s)	173, 237, 323, 393
SspMI	CTAG	4 cut(s)	186, 272, 299, 344
StyD4I	CCNGG	3 cut(s)	8, 132, 409
StyI	CCWWGG	2 cut(s)	786, 889
TaaI	ACNGT	2 cut(s)	92, 353
TaqI	TCGA	8 cut(s)	21, 35, 198, 303, 348, 370, 559, 882
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	7 cut(s)	251, 258, 442, 449, 733, 809, 1022
TatI	WGTACW	1 cut(s)	897
TauI	GCSGC	2 cut(s)	176, 240
TfiI	GAWTC	3 cut(s)	221, 561, 581
Tru1I	TTAA	1 cut(s)	1090
Tru9I	TTAA	1 cut(s)	1090
TscAI	CASTG	3 cut(s)	60, 1001, 1015
TseFI	GTSAC	2 cut(s)	285, 353
TseI	GCWGC	6 cut(s)	154, 176, 498, 549, 914, 917
Tsp45I	GTSAC	2 cut(s)	285, 353
TspDTI	ATGAA	2 cut(s)	350, 417
TspGWI	ACGGA	2 cut(s)	260, 815
TspRI	CASTG	3 cut(s)	60, 1001, 1015
Tth111I	GACNNNGTC	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	848
XapI	RAATTY	5 cut(s)	251, 258, 449, 733, 809
XceI	RCATGY	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	4 cut(s)	186, 272, 299, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.