Rw2G017550

Dymeclin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014671
Physical Location & Seq
Forward (+)
21673586 .. 21675425
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017550.1

Sequence Viewer

Length: 372 bp
ATGCAACGGATGTTGAATGATGTTTTTCTCCATACAACTTGTCTAGCAACTTTGGCAAACATGGCACCTCATGTCGACCGTTTGAGTGCATATGCATCCCAGAGATTGGTTAGCCTATTTGATATGCTCTCTCGGAAGCCTGGTTTACTTCTATCTCTAAGTGGAATCAGTTTCAATCCTCGAGCCATAAATTTGTTTCCAATTGATCAACCTTCCGAGAAACAGAGTGATTATGAAGTGGTGTCCGACAATCATGTAAATGGAGGCCTTCTATATATGTTGAGTGGGGAAGAAAGTAGTTCTGTTAGAGAAATGCAGTACCTGCCACCAATAAGACCACATTATATTCTAGTCCTTCAGCATTGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dymeclin

Protein Analysis

123

Amino Acids

13.83

Weight (kDa)

6.16

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dymeclin PF09742 5 - 87 1.6e-18 Dyggve-Melchior-Clausen syndrome protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 330
AccB1I GGYRCC 1 cut(s) 64
AccB7I CCANNNNNTGG 1 cut(s) 106
AccI GTMKAC 1 cut(s) 75
AcsI RAATTY 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 16, 175
AjnI CCWGG 1 cut(s) 139
AlwNI CAGNNNCTG 1 cut(s) 322
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 1 cut(s) 265
ApoI RAATTY 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 180
BanI GGYRCC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 1 cut(s) 205
BfaI CTAG 2 cut(s) 44, 350
BfuAI ACCTGC 1 cut(s) 330
Bme1390I CCNGG 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 15, 95
BseLI CCNNNNNNNGG 1 cut(s) 106
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 267
BshNI GGYRCC 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 106
BsnI GGCC 1 cut(s) 267
BsoBI CYCGRG 1 cut(s) 180
Bsp143I GATC 1 cut(s) 205
BspANI GGCC 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 66
BspMI ACCTGC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 64
BssMI GATC 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 80
BstAPI GCANNNNNTGC 1 cut(s) 322
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 15, 95
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 3 cut(s) 53, 62, 322
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 2 cut(s) 15, 95
BveI ACCTGC 1 cut(s) 330
CaiI CAGNNNCTG 1 cut(s) 322
Csp6I GTAC 1 cut(s) 319
CviAII CATG 3 cut(s) 61, 71, 254
CviJI RGCY 4 cut(s) 114, 139, 185, 267
CviKI_1 RGCY 4 cut(s) 114, 139, 185, 267
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 1 cut(s) 158
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eco147I AGGCCT 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 97
FaeI CATG 3 cut(s) 64, 74, 257
FatI CATG 3 cut(s) 60, 70, 253
FauNDI CATATG 1 cut(s) 91
FbaI TGATCA 1 cut(s) 205
FblI GTMKAC 1 cut(s) 75
FokI GGATG 2 cut(s) 22, 82
FspBI CTAG 2 cut(s) 44, 350
HaeIII GGCC 1 cut(s) 267
Hin1II CATG 3 cut(s) 64, 74, 257
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 1 cut(s) 165
Hpy166II GTNNAC 2 cut(s) 76, 146
Hpy188I TCNGA 3 cut(s) 135, 217, 247
Hpy8I GTNNAC 2 cut(s) 76, 146
HpyAV CCTTC 3 cut(s) 222, 278, 365
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 4, 89, 95, 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 62, 322
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 3 cut(s) 64, 74, 257
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 4 cut(s) 113, 126, 153, 335
LweI GCATC 1 cut(s) 104
MaeI CTAG 2 cut(s) 44, 350
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 1 cut(s) 302
MfeI CAATTG 1 cut(s) 201
MluCI AATT 2 cut(s) 190, 201
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 3 cut(s) 78, 189, 257
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 1 cut(s) 370
MslI CAYNNNNRTG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 141
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 53, 62, 322
NdeI CATATG 1 cut(s) 91
NdeII GATC 1 cut(s) 205
NlaIII CATG 3 cut(s) 64, 74, 257
NlaIV GGNNCC 1 cut(s) 66
NsiI ATGCAT 1 cut(s) 97
PaeR7I CTCGAG 1 cut(s) 180
PceI AGGCCT 1 cut(s) 267
PfeI GAWTC 1 cut(s) 165
PflMI CCANNNNNTGG 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 66
PspXI VCTCGAGB 1 cut(s) 180
PstNI CAGNNNCTG 1 cut(s) 322
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 258
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 370
Sau3AI GATC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 141
SetI ASST 3 cut(s) 70, 214, 324
SfaNI GCATC 1 cut(s) 104
Sfr274I CTCGAG 1 cut(s) 180
SlaI CTCGAG 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 2 cut(s) 190, 201
SseBI AGGCCT 1 cut(s) 267
SspMI CTAG 2 cut(s) 44, 350
StuI AGGCCT 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 2 cut(s) 75, 181
TasI AATT 2 cut(s) 190, 201
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TspDTI ATGAA 1 cut(s) 249
TspGWI ACGGA 1 cut(s) 22
Van91I CCANNNNNTGG 1 cut(s) 106
XapI RAATTY 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 2 cut(s) 44, 350
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.