RchiOBHm_Chr4g0393611

Dymeclin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014671
Physical Location & Seq
Reverse (-)
9149222 .. 9150872
1651 bp
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UTR
Exon/CDS
Intron
PRQ36617

Sequence Viewer

Length: 294 bp
ATGCAGCAATGTCTCAGGTTACTGGACAAAAATGTGCTTTTGAAAGGGAGTAGATATCTTTCTGACAACCCTTACTGTAAGGCCTTGGAACATGCAACAGATGTTGAATTTGATCGTGTAGATACTGAGGGTAATGGGCGTAGTGGTCCAGTTTTGAGGTACTTGACTGATGAGGCTGCTGCACTTTTGCTTTACTCTTTATTGCAAGGAAATGCTGACTATCTGGAGTGTGTCTTGGTGCGAACTGATTTGGATACACTGGTATTTGATGCCCATCCTGGAAGCGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dymeclin

Protein Analysis

97

Amino Acids

10.82

Weight (kDa)

4.64

Isoelectric Point (pI)

20.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dymeclin PF09742 18 - 88 1.6e-07 Dyggve-Melchior-Clausen syndrome protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 2 cut(s) 43, 107
AjnI CCWGG 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 17
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 3 cut(s) 4, 176, 179
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 146
AvaII GGWCC 1 cut(s) 146
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BbvI GCAGC 3 cut(s) 16, 163, 166
BccI CCATC 1 cut(s) 282
BciT130I CCWGG 1 cut(s) 279
BciVI GTATCC 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 17
BfuI GTATCC 1 cut(s) 247
BisI GCNGC 3 cut(s) 5, 177, 180
BlsI GCNGC 3 cut(s) 6, 178, 181
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 84
Bse1I ACTGG 3 cut(s) 27, 149, 264
Bse3DI GCAATG 1 cut(s) 14
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 273
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 2 cut(s) 28, 117
BseNI ACTGG 3 cut(s) 27, 149, 264
BseXI GCAGC 3 cut(s) 16, 163, 166
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 17
BsnI GGCC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 112
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 2 cut(s) 27, 118
BsrDI GCAATG 1 cut(s) 14
BsrI ACTGG 3 cut(s) 27, 149, 264
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 77
BstDEI CTNAG 2 cut(s) 14, 126
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 277
BstV1I GCAGC 3 cut(s) 16, 163, 166
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 92
CviJI RGCY 2 cut(s) 83, 176
CviKI_1 RGCY 2 cut(s) 83, 176
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 14, 126
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 84
Eco147I AGGCCT 1 cut(s) 83
Eco32I GATATC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 277
EcoRV GATATC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 95
FaiI YATR 3 cut(s) 93, 290, 292
FatI CATG 1 cut(s) 91
Fnu4HI GCNGC 3 cut(s) 5, 177, 180
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 3 cut(s) 5, 177, 180
GluI GCNGC 3 cut(s) 5, 177, 180
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 1 cut(s) 83
Hin1II CATG 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 224
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 4 cut(s) 4, 95, 182, 205
HpyF3I CTNAG 2 cut(s) 14, 126
Hsp92II CATG 1 cut(s) 95
Kzo9I GATC 1 cut(s) 112
LpnPI CCDG 5 cut(s) 8, 162, 209, 245, 264
Lsp1109I GCAGC 3 cut(s) 16, 163, 166
LweI GCATC 1 cut(s) 259
MaeIII GTNAC 1 cut(s) 18
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MluCI AATT 1 cut(s) 107
MnlI CCTC 3 cut(s) 121, 150, 166
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 95
NspI RCATGY 1 cut(s) 95
PceI AGGCCT 1 cut(s) 83
PfoI TCCNGGA 1 cut(s) 277
PkrI GCNGC 3 cut(s) 6, 178, 181
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspPI GGNCC 1 cut(s) 146
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SatI GCNGC 3 cut(s) 5, 177, 180
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 279
SetI ASST 2 cut(s) 20, 161
SfaNI GCATC 1 cut(s) 259
SinI GGWCC 1 cut(s) 146
Sse9I AATT 1 cut(s) 107
SseBI AGGCCT 1 cut(s) 83
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 77
TasI AATT 1 cut(s) 107
TscAI CASTG 1 cut(s) 264
TseI GCWGC 3 cut(s) 4, 176, 179
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.