Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0014671

Physical Location & Seq

Genomic Coordinates Reverse (-)

7991983 .. 7996359

Gene Structure 4377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG044500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCCAACTGATATTACAAGAGATCTAAACATTGAGGATTTTGTGATGTGTAGTGTGCTTACGTTTATTGGATCAATAGATGTAAGGTTACTGGACAAAAATGTGCTTTTGAAAGGGAGTAGATATCTTTCTGACAACCCTTACTGTAAGGCCTTGGAACATGCAACAGATGTTGAATTTGATCGTGTAGATACTGAGGGTAATGGGCGTAGTGGTCCAGTTTTGAGGTACTTGACTGATGAGGCTGCTGCACTTTTGCTTTACTCTTTATTGCAAGGAAATGCTGACTATCTGGAGTGTGTCTTGGTGCGAACTGATTTGGATACACTGTTGATGCCCATCCTGGAAGCGTTATATGATGCTCCAAAAAGGACATCTAATCAAATCTACATGTTGCTGATCATACTTCTCATACTTAGGATTCATCTTTTAATGCAAGCATTCACAAATTGGACAGTGCAGTATAACCTATCTGAGTTGCAGGACGTTTATATCCATACAACTTGTCTAGCAACTTTGGCAAACATGGCACCTCATGTCCACCGTTTGAGTGCGTATGCATCCCAGAGATTGGTCAGCCTATTTGATATGCTCTTTTGGAAGTATAACAAACTAGCAGAGGTGTGTGATAATCAGATGACATTAGCCAAAGGCAACTCAATAGAAGACGATACTTCAACGGAGATGCATATATATACCGACTTCTTGAGACTTGTCCTTGAAATATTAAATGCAATTTTGACATATGCTCTGCCACGGAATCCTGAGGTTATATATGCGATAAATGCACAGGCACGAAGTATTTCAGCCTTTCAGGAATCATCCACATTTCAATCATGGCATGGTGAAAGGATGAAGATGGTCACCCAGTTGCGTTCCACATATGAACAAGAGAGTCATCCAGAGGAGTTCTTTATTCCATACTTGTGGCAGCTAGTACTATCCCGCTGTGGAATCAGTTTCAATCCTCGAGCCATAAATTTGTTTCCAGTTGATCAACCTTTCGAGAAACAGAGTGATTATGAAGTGGTGTCCGACAATCATGTAAATGGAGAGGTGGCAAAGCATGCAGTCTTTCTTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dymeclin

Protein Analysis

362

Amino Acids

41.51

Weight (kDa)

4.9

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dymeclin	PF09742	41 - 139	5.9e-21	Dyggve-Melchior-Clausen syndrome protein
Dymeclin	PF09742	152 - 279	3.7e-38	Dyggve-Melchior-Clausen syndrome protein
Dymeclin	PF09742	279 - 312	1.5e-06	Dyggve-Melchior-Clausen syndrome protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33161 FvH4_4g01230
rosa_chinensis	RchiOBHm_Chr4g0393591 RchiOBHm_Chr4g0393611
rosa_laevigata	RLG00000009745 RLG00000009746
rosa_multiflora	Rmu_co8286683.1_g000001 Rmu_sc0000131.1_g000053 Rmu_sc0001089.1_g000030 Rmu_sc0001089.1_g000031 Rmu_sc0023155.1_g000001
rosa_samantha	Rh4BG044500 Rh4CG321200 Rh4CG321300 Rh4DG045100 Rh6AG189000
rosa_wichuraiana	Rw2G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	571
AciI	CCGC	1 cut(s)	946
AclWI	GGATC	2 cut(s)	79, 1076
AcsI	RAATTY	2 cut(s)	176, 979
AfaI	GTAC	2 cut(s)	230, 939
AfiI	CCNNNNNNNGG	1 cut(s)	571
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	6 cut(s)	112, 176, 678, 722, 833, 964
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	1 cut(s)	934
AluI	AGCT	1 cut(s)	934
Alw26I	GTCTC	1 cut(s)	703
AlwI	GGATC	2 cut(s)	79, 1076
Ama87I	CYCGRG	1 cut(s)	969
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	3 cut(s)	245, 248, 931
ApoI	RAATTY	2 cut(s)	176, 979
Asp700I	GAANNNNTTC	1 cut(s)	802
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	856, 857
AvaI	CYCGRG	1 cut(s)	969
AvaII	GGWCC	1 cut(s)	215
AxyI	CCTNAGG	1 cut(s)	765
BanI	GGYRCC	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	672
BbvI	GCAGC	3 cut(s)	232, 235, 943
BccI	CCATC	2 cut(s)	347, 853
BciT130I	CCWGG	1 cut(s)	344
BciVI	GTATCC	1 cut(s)	316
BclI	TGATCA	2 cut(s)	399, 994
BcoDI	GTCTC	1 cut(s)	703
BfaI	CTAG	3 cut(s)	509, 614, 935
BfuI	GTATCC	1 cut(s)	316
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	3 cut(s)	246, 249, 932
BlsI	GCNGC	3 cut(s)	247, 250, 933
BmcAI	AGTACT	1 cut(s)	939
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	215
BmeT110I	CYCGRG	1 cut(s)	969
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	344
BmrI	ACTGGG	1 cut(s)	862
BmsI	GCATC	4 cut(s)	324, 349, 569, 675
BmuI	ACTGGG	1 cut(s)	862
BpiI	GAAGAC	1 cut(s)	672
BpmI	CTGGAG	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	727
BsaBI	GATNNNNATC	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	153, 755
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse1I	ACTGG	4 cut(s)	96, 218, 868, 989
Bse21I	CCTNAGG	1 cut(s)	765
Bse8I	GATNNNNATC	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	153, 755
BseGI	GGATG	5 cut(s)	339, 560, 821, 858, 898
BseJI	GATNNNNATC	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseMII	CTCAG	3 cut(s)	186, 465, 756
BseNI	ACTGG	4 cut(s)	96, 218, 868, 989
BseRI	GAGGAG	1 cut(s)	920
BseXI	GCAGC	3 cut(s)	232, 235, 943
BsgI	GTGCAG	2 cut(s)	234, 479
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	529
BsiHKCI	CYCGRG	1 cut(s)	969
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmAI	GTCTC	1 cut(s)	703
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	969
Bsp143I	GATC	6 cut(s)	22, 71, 181, 399, 994, 1081
BspACI	CCGC	1 cut(s)	946
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	3 cut(s)	187, 466, 757
BspLI	GGNNCC	1 cut(s)	531
BspPI	GGATC	2 cut(s)	79, 1076
BspT107I	GGYRCC	1 cut(s)	529
BsrI	ACTGG	4 cut(s)	96, 218, 868, 989
BssECI	CCNNGG	2 cut(s)	153, 755
BssMI	GATC	6 cut(s)	22, 71, 181, 399, 994, 1081
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	4 cut(s)	146, 330, 457, 545
BstAPI	GCANNNNNTGC	1 cut(s)	1067
BstC8I	GCNNGC	2 cut(s)	438, 1068
BstDEI	CTNAG	4 cut(s)	195, 416, 474, 765
BstDSI	CCRYGG	1 cut(s)	755
BstEII	GGTNACC	1 cut(s)	862
BstF5I	GGATG	5 cut(s)	339, 560, 821, 858, 898
BstKTI	GATC	6 cut(s)	25, 74, 184, 402, 997, 1084
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	6 cut(s)	22, 71, 181, 399, 994, 1081
BstMWI	GCNNNNNNNGC	4 cut(s)	518, 527, 785, 1067
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	3 cut(s)	164, 394, 1070
BstPI	GGTNACC	1 cut(s)	862
BstSCI	CCNGG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	232, 235, 943
BstV2I	GAAGAC	1 cut(s)	672
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	927
BstYI	RGATCY	1 cut(s)	22
Bsu36I	CCTNAGG	1 cut(s)	765
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	755
BtsCI	GGATG	5 cut(s)	339, 560, 821, 858, 898
BtsIMutI	CAGTG	2 cut(s)	326, 462
Cac8I	GCNNGC	2 cut(s)	438, 1068
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	229, 938
CviAII	CATG	8 cut(s)	161, 391, 526, 536, 837, 842, 1043, 1067
CviJI	RGCY	7 cut(s)	152, 245, 579, 647, 809, 934, 974
CviKI_1	RGCY	7 cut(s)	152, 245, 579, 647, 809, 934, 974
CviQI	GTAC	2 cut(s)	229, 938
DdeI	CTNAG	4 cut(s)	195, 416, 474, 765
DpnI	GATC	6 cut(s)	24, 73, 183, 401, 996, 1083
DpnII	GATC	6 cut(s)	22, 71, 181, 399, 994, 1081
Eco130I	CCWWGG	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	215
Eco81I	CCTNAGG	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	969
Eco91I	GGTNACC	1 cut(s)	862
EcoO65I	GGTNACC	1 cut(s)	862
EcoRII	CCWGG	1 cut(s)	342
EcoRV	GATATC	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	2 cut(s)	562, 690
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	8 cut(s)	164, 394, 529, 539, 840, 845, 1046, 1070
FatI	CATG	8 cut(s)	160, 390, 525, 535, 836, 841, 1042, 1066
FauI	CCCGC	1 cut(s)	953
FauNDI	CATATG	2 cut(s)	745, 883
FbaI	TGATCA	2 cut(s)	399, 994
Fnu4HI	GCNGC	3 cut(s)	246, 249, 932
FokI	GGATG	5 cut(s)	326, 547, 808, 865, 885
Fsp4HI	GCNGC	3 cut(s)	246, 249, 932
FspBI	CTAG	3 cut(s)	509, 614, 935
GluI	GCNGC	3 cut(s)	246, 249, 932
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	152
Hin1II	CATG	8 cut(s)	164, 394, 529, 539, 840, 845, 1046, 1070
HinfI	GANTC	5 cut(s)	421, 760, 818, 895, 954
HphI	GGTGA	2 cut(s)	856, 857
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	4 cut(s)	133, 475, 636, 1036
Hpy188III	TCNNGA	7 cut(s)	293, 706, 764, 815, 902, 1006, 1079
Hpy8I	GTNNAC	1 cut(s)	541
HpyCH4III	ACNGT	4 cut(s)	146, 330, 457, 545
HpyCH4IV	ACGT	2 cut(s)	62, 486
HpyF10VI	GCNNNNNNNGC	4 cut(s)	518, 527, 785, 1067
HpyF3I	CTNAG	4 cut(s)	195, 416, 474, 765
HpySE526I	ACGT	2 cut(s)	62, 486
Hsp92II	CATG	8 cut(s)	164, 394, 529, 539, 840, 845, 1046, 1070
Ksp22I	TGATCA	2 cut(s)	399, 994
Kzo9I	GATC	6 cut(s)	22, 71, 181, 399, 994, 1081
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	3 cut(s)	232, 235, 943
LweI	GCATC	4 cut(s)	324, 349, 569, 675
MaeI	CTAG	3 cut(s)	509, 614, 935
MaeII	ACGT	2 cut(s)	62, 486
MaeIII	GTNAC	2 cut(s)	87, 862
MalI	GATC	6 cut(s)	24, 73, 183, 401, 996, 1083
MboI	GATC	6 cut(s)	22, 71, 181, 399, 994, 1081
MboII	GAAGA	2 cut(s)	677, 868
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	4 cut(s)	176, 448, 735, 979
MlyI	GAGTC	1 cut(s)	904
MmeI	TCCRAC	1 cut(s)	1059
Mph1103I	ATGCAT	2 cut(s)	562, 690
MroXI	GAANNNNTTC	1 cut(s)	802
MseI	TTAA	2 cut(s)	431, 728
MslI	CAYNNNNRTG	2 cut(s)	925, 1047
MspA1I	CMGCKG	1 cut(s)	948
MspR9I	CCNGG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	4 cut(s)	518, 527, 785, 1067
NdeI	CATATG	2 cut(s)	745, 883
NdeII	GATC	6 cut(s)	22, 71, 181, 399, 994, 1081
NlaIII	CATG	8 cut(s)	164, 394, 529, 539, 840, 845, 1046, 1070
NlaIV	GGNNCC	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	862
NsiI	ATGCAT	2 cut(s)	562, 690
NspI	RCATGY	3 cut(s)	164, 394, 1070
PaeI	GCATGC	1 cut(s)	1070
PaeR7I	CTCGAG	1 cut(s)	969
PceI	AGGCCT	1 cut(s)	152
PciI	ACATGT	1 cut(s)	390
PctI	GAATGC	1 cut(s)	440
PdmI	GAANNNNTTC	1 cut(s)	802
PfeI	GAWTC	4 cut(s)	421, 760, 818, 954
PflMI	CCANNNNNTGG	1 cut(s)	571
PfoI	TCCNGGA	1 cut(s)	342
PkrI	GCNGC	3 cut(s)	247, 250, 933
PleI	GAGTC	1 cut(s)	903
PpsI	GAGTC	1 cut(s)	903
PscI	ACATGT	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	342
PspEI	GGTNACC	1 cut(s)	862
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	1 cut(s)	215
PspXI	VCTCGAGB	1 cut(s)	969
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	2 cut(s)	230, 939
RsaNI	GTAC	2 cut(s)	229, 938
RseI	CAYNNNNRTG	2 cut(s)	925, 1047
SaqAI	TTAA	2 cut(s)	431, 728
SatI	GCNGC	3 cut(s)	246, 249, 932
Sau3AI	GATC	6 cut(s)	22, 71, 181, 399, 994, 1081
Sau96I	GGNCC	1 cut(s)	215
ScaI	AGTACT	1 cut(s)	939
SchI	GAGTC	1 cut(s)	904
ScrFI	CCNGG	1 cut(s)	344
SfaNI	GCATC	4 cut(s)	324, 349, 569, 675
Sfr274I	CTCGAG	1 cut(s)	969
SinI	GGWCC	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	969
SmiMI	CAYNNNNRTG	2 cut(s)	925, 1047
SmlI	CTYRAG	2 cut(s)	706, 969
SmoI	CTYRAG	2 cut(s)	706, 969
SphI	GCATGC	1 cut(s)	1070
Sse9I	AATT	4 cut(s)	176, 448, 735, 979
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	1 cut(s)	946
SspI	AATATT	1 cut(s)	726
SspMI	CTAG	3 cut(s)	509, 614, 935
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	4 cut(s)	146, 330, 457, 545
TaiI	ACGT	2 cut(s)	65, 489
TaqI	TCGA	2 cut(s)	970, 1005
TasI	AATT	4 cut(s)	176, 448, 735, 979
TatI	WGTACW	1 cut(s)	937
TfiI	GAWTC	4 cut(s)	421, 760, 818, 954
Tru1I	TTAA	2 cut(s)	431, 728
Tru9I	TTAA	2 cut(s)	431, 728
TscAI	CASTG	2 cut(s)	333, 462
TseFI	GTSAC	1 cut(s)	862
TseI	GCWGC	3 cut(s)	245, 248, 931
Tsp45I	GTSAC	1 cut(s)	862
TspDTI	ATGAA	4 cut(s)	413, 869, 900, 1038
TspGWI	ACGGA	2 cut(s)	695, 772
TspRI	CASTG	2 cut(s)	333, 462
Van91I	CCANNNNNTGG	1 cut(s)	571
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	2 cut(s)	176, 979
XceI	RCATGY	3 cut(s)	164, 394, 1070
XhoI	CTCGAG	1 cut(s)	969
XmnI	GAANNNNTTC	1 cut(s)	802
XspI	CTAG	3 cut(s)	509, 614, 935
ZrmI	AGTACT	1 cut(s)	939
Zsp2I	ATGCAT	2 cut(s)	562, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.