Rh4DG045100

Dymeclin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014671
Physical Location & Seq
Reverse (-)
7413870 .. 7414464
595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG045100.1

Sequence Viewer

Length: 231 bp
ATGGTCACCCAGTTGCGTTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTCTTTATTCCATACTTGTGGCAGCTAGTACTATCCCGCTGTGGAATCAGTTTCAATCCTCGAGCCATAAATTTGTTTCCAGTTGATCAACCTTTCGAGAAACAGAGTGATTATGAAGTGGTGTCCGACAATCATGTAAATGGAGACGTGGCAAAGCATGCAGTCTTTCTTGATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dymeclin

Protein Analysis

76

Amino Acids

8.9

Weight (kDa)

4.7

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dymeclin PF09742 2 - 26 3e-06 Dyggve-Melchior-Clausen syndrome protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 88
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 121
AfaI GTAC 1 cut(s) 81
AgsI TTSAA 1 cut(s) 106
AjiI CACGTC 1 cut(s) 199
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 111
BbvI GCAGC 1 cut(s) 85
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 77
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
BmcAI AGTACT 1 cut(s) 81
BmeT110I CYCGRG 1 cut(s) 111
BmgBI CACGTC 1 cut(s) 199
BmrI ACTGGG 1 cut(s) 4
BmuI ACTGGG 1 cut(s) 4
Bse1I ACTGG 2 cut(s) 10, 131
BseGI GGATG 1 cut(s) 40
BseNI ACTGG 2 cut(s) 10, 131
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 189
BsmBI CGTCTC 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 111
Bsp143I GATC 2 cut(s) 136, 223
BspACI CCGC 1 cut(s) 88
BspPI GGATC 1 cut(s) 218
BsrI ACTGG 2 cut(s) 10, 131
BssMI GATC 2 cut(s) 136, 223
BstAPI GCANNNNNTGC 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 210
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 2 cut(s) 139, 226
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 2 cut(s) 136, 223
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 212
BstPI GGTNACC 1 cut(s) 4
BstV1I GCAGC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 80
CviAII CATG 2 cut(s) 185, 209
CviJI RGCY 2 cut(s) 76, 116
CviKI_1 RGCY 2 cut(s) 76, 116
CviQI GTAC 1 cut(s) 80
DpnI GATC 2 cut(s) 138, 225
DpnII GATC 2 cut(s) 136, 223
Eco88I CYCGRG 1 cut(s) 111
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 2 cut(s) 188, 212
FaiI YATR 8 cut(s) 25, 27, 64, 119, 165, 186, 210, 229
FatI CATG 2 cut(s) 184, 208
FauI CCCGC 1 cut(s) 95
FauNDI CATATG 1 cut(s) 25
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 1 cut(s) 77
GluI GCNGC 1 cut(s) 74
Hin1II CATG 2 cut(s) 188, 212
HinfI GANTC 2 cut(s) 37, 96
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 3 cut(s) 44, 148, 221
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 2 cut(s) 188, 212
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 2 cut(s) 136, 223
LpnPI CCDG 3 cut(s) 23, 57, 144
Lsp1109I GCAGC 1 cut(s) 85
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 4
MalI GATC 2 cut(s) 138, 225
MboI GATC 2 cut(s) 136, 223
MluCI AATT 1 cut(s) 121
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 2 cut(s) 40, 120
MslI CAYNNNNRTG 2 cut(s) 67, 189
MspA1I CMGCKG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeI CATATG 1 cut(s) 25
NdeII GATC 2 cut(s) 136, 223
NlaIII CATG 2 cut(s) 188, 212
NmuCI GTSAC 1 cut(s) 4
NspI RCATGY 1 cut(s) 212
PaeI GCATGC 1 cut(s) 212
PaeR7I CTCGAG 1 cut(s) 111
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 1 cut(s) 75
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PspEI GGTNACC 1 cut(s) 4
PspXI VCTCGAGB 1 cut(s) 111
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
RseI CAYNNNNRTG 2 cut(s) 67, 189
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 2 cut(s) 136, 223
ScaI AGTACT 1 cut(s) 81
SchI GAGTC 1 cut(s) 46
SetI ASST 3 cut(s) 78, 145, 201
Sfr274I CTCGAG 1 cut(s) 111
SlaI CTCGAG 1 cut(s) 111
SmiMI CAYNNNNRTG 2 cut(s) 67, 189
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
SphI GCATGC 1 cut(s) 212
Sse9I AATT 1 cut(s) 121
SsiI CCGC 1 cut(s) 88
SspMI CTAG 1 cut(s) 77
TaiI ACGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 112, 147
TasI AATT 1 cut(s) 121
TatI WGTACW 1 cut(s) 79
TfiI GAWTC 1 cut(s) 96
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 42, 180
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 212
XhoI CTCGAG 1 cut(s) 111
XspI CTAG 1 cut(s) 77
ZrmI AGTACT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.