Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0014671

Physical Location & Seq

Genomic Coordinates Reverse (-)

58351602 .. 58365810

Gene Structure 14209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG321200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTGCTGATCATACTTCTCATACTTAGTCAGGATTCATCTTTTAATGCAAGCATTCACAAATTGGATGTTTATCTCCATACAACTTGTCTAGCAACTTTGGCAAACATGGCACCTCATTATCCAGTAAACATTGGAATCAGTTTCAATCCTCGAGCCATAAATTTGTTTCCAATTGATCAACCTTCCGAGAAACAGAGTGATTATGAAGTTGTGGAGGCCAGGCTCTCCATTGAGGAGGCTGCTGGAGACACTGAGGAGGCCCCCGGAGACACTCAGGAGGCTGAGGAGGCCAGGGTCGCCGTTGTGGAGGCCGCCGGAGACACTAAGGAAGCTGAGGAGTCCAGGGTAGCCGTTGCGGAGGCCGCCAGAGACACTGAGGAGGCCAGGGTGGCCGTTACGGTGGCCGCCAGAGACACTGAGGAGGCTGGAGACATTACTATCGAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dymeclin

Protein Analysis

150

Amino Acids

16.2

Weight (kDa)

4.26

Isoelectric Point (pI)

59.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33161 FvH4_4g01230
rosa_chinensis	RchiOBHm_Chr4g0393591 RchiOBHm_Chr4g0393611
rosa_laevigata	RLG00000009745 RLG00000009746
rosa_multiflora	Rmu_co8286683.1_g000001 Rmu_sc0000131.1_g000053 Rmu_sc0001089.1_g000030 Rmu_sc0001089.1_g000031 Rmu_sc0023155.1_g000001
rosa_samantha	Rh4BG044500 Rh4CG321200 Rh4CG321300 Rh4DG045100 Rh6AG189000
rosa_wichuraiana	Rw2G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	112
AciI	CCGC	4 cut(s)	315, 359, 366, 408
AcoI	YGGCCR	2 cut(s)	393, 405
AcsI	RAATTY	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	4 cut(s)	221, 293, 344, 386
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
Alw26I	GTCTC	6 cut(s)	243, 264, 315, 366, 408, 426
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	8 cut(s)	219, 261, 291, 312, 363, 384, 393, 405
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	267
AvaI	CYCGRG	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	112
BbvCI	CCTCAGC	2 cut(s)	285, 336
BbvI	GCAGC	1 cut(s)	229
BceAI	ACGGC	3 cut(s)	287, 338, 380
BciT130I	CCWGG	4 cut(s)	223, 295, 346, 388
BclI	TGATCA	2 cut(s)	9, 178
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	6 cut(s)	243, 264, 315, 366, 408, 426
BfaI	CTAG	1 cut(s)	92
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	4 cut(s)	243, 315, 366, 408
BlsI	GCNGC	4 cut(s)	244, 316, 367, 409
Bme1390I	CCNGG	5 cut(s)	223, 267, 295, 346, 388
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	114, 264
BmrFI	CCNGG	5 cut(s)	223, 267, 295, 346, 388
BpmI	CTGGAG	2 cut(s)	267, 450
Bpu10I	CCTNAGC	2 cut(s)	285, 336
BpuMI	CCSGG	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	72
BsaJI	CCNNGG	4 cut(s)	265, 294, 345, 387
Bse1I	ACTGG	1 cut(s)	125
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	4 cut(s)	223, 295, 346, 388
BseDI	CCNNGG	4 cut(s)	265, 294, 345, 387
BseGI	GGATG	1 cut(s)	73
BseJI	GATNNNNATC	1 cut(s)	72
BseMII	CTCAG	6 cut(s)	246, 276, 290, 327, 369, 411
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	6 cut(s)	251, 272, 302, 353, 395, 437
BseXI	GCAGC	1 cut(s)	229
BshFI	GGCC	8 cut(s)	221, 263, 293, 314, 365, 386, 395, 407
BshNI	GGYRCC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	267, 318
BsmAI	GTCTC	6 cut(s)	243, 264, 315, 366, 408, 426
BsmI	GAATGC	1 cut(s)	54
BsnI	GGCC	8 cut(s)	221, 263, 293, 314, 365, 386, 395, 407
BsoBI	CYCGRG	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	9, 178
BspACI	CCGC	4 cut(s)	315, 359, 366, 408
BspANI	GGCC	8 cut(s)	221, 263, 293, 314, 365, 386, 395, 407
BspCNI	CTCAG	6 cut(s)	247, 277, 289, 328, 370, 412
BspLI	GGNNCC	2 cut(s)	114, 264
BspT107I	GGYRCC	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	4 cut(s)	265, 294, 345, 387
BssMI	GATC	2 cut(s)	9, 178
Bst2UI	CCWGG	4 cut(s)	223, 295, 346, 388
Bst4CI	ACNGT	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	8 cut(s)	26, 255, 276, 285, 327, 336, 378, 420
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	12, 181
BstMAI	GTCTC	6 cut(s)	243, 264, 315, 366, 408, 426
BstMBI	GATC	2 cut(s)	9, 178
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 110, 290, 299, 365, 392
BstNI	CCWGG	4 cut(s)	223, 295, 346, 388
BstSCI	CCNGG	5 cut(s)	221, 265, 293, 344, 386
BstV1I	GCAGC	1 cut(s)	229
BsuRI	GGCC	8 cut(s)	221, 263, 293, 314, 365, 386, 395, 407
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	4 cut(s)	252, 375, 417, 448
Cac8I	GCNNGC	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	262
CviAII	CATG	1 cut(s)	109
DdeI	CTNAG	8 cut(s)	26, 255, 276, 285, 327, 336, 378, 420
DpnI	GATC	2 cut(s)	11, 180
DpnII	GATC	2 cut(s)	9, 178
EaeI	YGGCCR	2 cut(s)	393, 405
Eco88I	CYCGRG	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	4 cut(s)	221, 293, 344, 386
FaeI	CATG	1 cut(s)	112
FaiI	YATR	6 cut(s)	14, 23, 81, 110, 161, 207
FatI	CATG	1 cut(s)	108
FbaI	TGATCA	2 cut(s)	9, 178
Fnu4HI	GCNGC	4 cut(s)	243, 315, 366, 408
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	4 cut(s)	243, 315, 366, 408
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	4 cut(s)	243, 315, 366, 408
GsuI	CTGGAG	2 cut(s)	267, 450
HaeIII	GGCC	8 cut(s)	221, 263, 293, 314, 365, 386, 395, 407
HapII	CCGG	2 cut(s)	267, 318
Hin1II	CATG	1 cut(s)	112
HinfI	GANTC	3 cut(s)	35, 138, 341
HpaII	CCGG	2 cut(s)	267, 318
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	32, 278
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 110, 290, 299, 365, 392
HpyF3I	CTNAG	8 cut(s)	26, 255, 276, 285, 327, 336, 378, 420
Hsp92II	CATG	1 cut(s)	112
Ksp22I	TGATCA	2 cut(s)	9, 178
Kzo9I	GATC	2 cut(s)	9, 178
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	2 cut(s)	11, 180
MboI	GATC	2 cut(s)	9, 178
MfeI	CAATTG	1 cut(s)	174
MluCI	AATT	3 cut(s)	62, 163, 174
MlyI	GAGTC	1 cut(s)	350
MseI	TTAA	1 cut(s)	45
MspI	CCGG	2 cut(s)	267, 318
MspR9I	CCNGG	5 cut(s)	223, 267, 295, 346, 388
MunI	CAATTG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	54
MvaI	CCWGG	4 cut(s)	223, 295, 346, 388
MwoI	GCNNNNNNNGC	6 cut(s)	101, 110, 290, 299, 365, 392
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	2 cut(s)	9, 178
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	2 cut(s)	114, 264
PaeR7I	CTCGAG	1 cut(s)	153
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	35, 138
PkrI	GCNGC	4 cut(s)	244, 316, 367, 409
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp6I	CCWGG	4 cut(s)	221, 293, 344, 386
PspGI	CCWGG	4 cut(s)	221, 293, 344, 386
PspN4I	GGNNCC	2 cut(s)	114, 264
PspPI	GGNCC	1 cut(s)	262
PspXI	VCTCGAGB	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	4 cut(s)	243, 315, 366, 408
Sau3AI	GATC	2 cut(s)	9, 178
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	5 cut(s)	223, 267, 295, 346, 388
SetI	ASST	3 cut(s)	118, 187, 337
SfiI	GGCCNNNNNGGCC	1 cut(s)	392
Sfr274I	CTCGAG	1 cut(s)	153
SlaI	CTCGAG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	3 cut(s)	62, 163, 174
SsiI	CCGC	4 cut(s)	315, 359, 366, 408
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	5 cut(s)	221, 265, 293, 344, 386
TaaI	ACNGT	1 cut(s)	403
TaqI	TCGA	2 cut(s)	154, 444
TasI	AATT	3 cut(s)	62, 163, 174
TauI	GCSGC	3 cut(s)	317, 368, 410
TfiI	GAWTC	2 cut(s)	35, 138
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	3 cut(s)	259, 382, 424
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	27, 222
TspRI	CASTG	3 cut(s)	259, 382, 424
XapI	RAATTY	1 cut(s)	163
XhoI	CTCGAG	1 cut(s)	153
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.