Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014671

Physical Location & Seq

Genomic Coordinates Forward (+)

57258170 .. 57264658

Gene Structure 6489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCTGATTGCAATGTCAACTCAGCTTCGTTCTGGGCCATCCCCAGGACCAGAAGATGTGAACCCATTTCTTGATGCAGCAATGTCTCAGGAAAGCTCGTTGATTATCTCGGTTGTTCGTAGACTGCTACTCAATTACATCACTGGACCTTCGATATCCCTGAATAGTGCATCTTATTCTATATTTTCTGAAGGAAGCCAGCCTAGTGTTATACAAAGAGTTAGTTCTGCAGCAGTTGATCGTGTAGATACTGAGGGTAATGGACATAGTGGTCCAGTTTTGAGGTATAACAAACTAGCAGAGGTGCGTAATAATCAGATGACATTAGCCAAAGGCAACTCAATAGAAGACGATACTGTGTTAGATTTTTTCAATAGTCGTGTGGATGCACAAAGAACAGATGGAGAATGGTCAGTGGAAAGAGTACTTCATGTCATAATCATTAATTGTAGATCATGGCATGGTGAAGGGATGAAGATGGTCACCCAGTTGCGCTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTCTTTATTCCGTACTTGTGGCAGCTAGTACTATCCCGCTGTGGAATAAGTTTCAATCCTCGAGCCATAAATTTGTTTCCAGTTGATCAACCTTTCGAGAGGGCTCGGTGGCTTCGATCGTGGCTCGGTAGCTTTGGTAGCGGGCTCGGTGGCCTCAGTGGCGGGTGGGGTTTAGGGGGGCTCGAGGTCTCATGGCAAGCAGGATTCACCTTCTCCGCTTCAGTGTACCAAGGCAGCATTCACCTTCTCCGCTTCAGTAAACATTTGCAATACAAACATGCAACTACACTTTCAATTTTGGAAACTACACTCGGTGGTGGTATTGGTGGTGGGATCCTTAGTAGTGGGCTCGGTGGCTTCGATCGTGGCTCGGTAGCTTTGGTAGCGGGCTCGGTGGCCTCAGTGGCGGGTGGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dymeclin

Protein Analysis

316

Amino Acids

34.1

Weight (kDa)

6.17

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dymeclin	PF09742	1 - 62	7e-06	Dyggve-Melchior-Clausen syndrome protein
Dymeclin	PF09742	118 - 185	2.3e-18	Dyggve-Melchior-Clausen syndrome protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33161 FvH4_4g01230
rosa_chinensis	RchiOBHm_Chr4g0393591 RchiOBHm_Chr4g0393611
rosa_laevigata	RLG00000009745 RLG00000009746
rosa_multiflora	Rmu_co8286683.1_g000001 Rmu_sc0000131.1_g000053 Rmu_sc0001089.1_g000030 Rmu_sc0001089.1_g000031 Rmu_sc0023155.1_g000001
rosa_samantha	Rh4BG044500 Rh4CG321200 Rh4CG321300 Rh4DG045100 Rh6AG189000
rosa_wichuraiana	Rw2G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	270
AccI	GTMKAC	1 cut(s)	121
AciI	CCGC	7 cut(s)	565, 669, 690, 744, 778, 914, 935
AclWI	GGATC	2 cut(s)	856, 869
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	3 cut(s)	210, 732, 766
AdeI	CACNNNGTG	1 cut(s)	842
AfaI	GTAC	4 cut(s)	426, 542, 558, 755
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	373, 583, 822
AjnI	CCWGG	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	750, 782
AluBI	AGCT	5 cut(s)	25, 96, 553, 660, 905
AluI	AGCT	5 cut(s)	25, 96, 553, 660, 905
Alw26I	GTCTC	2 cut(s)	90, 721
AlwI	GGATC	2 cut(s)	856, 869
Ama87I	CYCGRG	2 cut(s)	588, 710
AoxI	GGCC	3 cut(s)	35, 679, 924
ApeKI	GCWGC	4 cut(s)	77, 230, 550, 762
ApoI	RAATTY	1 cut(s)	598
AseI	ATTAAT	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	4 cut(s)	35, 47, 146, 272
AsuHPI	GGTGA	4 cut(s)	475, 476, 727, 761
AvaI	CYCGRG	2 cut(s)	588, 710
AvaII	GGWCC	3 cut(s)	47, 146, 272
BamHI	GGATCC	1 cut(s)	861
BanII	GRGCYC	5 cut(s)	634, 675, 711, 879, 920
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	4 cut(s)	89, 242, 562, 774
BccI	CCATC	3 cut(s)	46, 395, 472
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	2 cut(s)	90, 721
BfaI	CTAG	3 cut(s)	204, 296, 554
BfmI	CTRYAG	1 cut(s)	228
BglI	GCCNNNNNGGC	2 cut(s)	687, 932
BisI	GCNGC	4 cut(s)	78, 231, 551, 763
BlsI	GCNGC	4 cut(s)	79, 232, 552, 764
BmcAI	AGTACT	2 cut(s)	426, 558
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	3 cut(s)	47, 146, 272
BmeT110I	CYCGRG	2 cut(s)	588, 710
BmgT120I	GGNCC	4 cut(s)	35, 47, 146, 272
BmiI	GGNNCC	1 cut(s)	863
BmrFI	CCNGG	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	3 cut(s)	64, 179, 376
BmuI	ACTGGG	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	721
BsaJI	CCNNGG	2 cut(s)	43, 757
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	4 cut(s)	148, 275, 487, 608
Bse3DI	GCAATG	2 cut(s)	18, 87
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	43, 757
BseGI	GGATG	4 cut(s)	38, 391, 477, 517
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	2 cut(s)	18, 87
BseMII	CTCAG	5 cut(s)	35, 101, 243, 697, 942
BseNI	ACTGG	4 cut(s)	148, 275, 487, 608
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	4 cut(s)	89, 242, 562, 774
Bsh1285I	CGRYCG	2 cut(s)	647, 892
BshFI	GGCC	3 cut(s)	37, 681, 926
BsiEI	CGRYCG	2 cut(s)	647, 892
BsiHKCI	CYCGRG	2 cut(s)	588, 710
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	90, 721
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	3 cut(s)	37, 681, 926
Bso31I	GGTCTC	1 cut(s)	721
BsoBI	CYCGRG	2 cut(s)	588, 710
Bsp1286I	GDGCHC	5 cut(s)	634, 675, 711, 879, 920
Bsp143I	GATC	6 cut(s)	238, 452, 613, 644, 861, 889
BspACI	CCGC	7 cut(s)	565, 669, 690, 744, 778, 914, 935
BspANI	GGCC	3 cut(s)	37, 681, 926
BspCNI	CTCAG	5 cut(s)	34, 100, 244, 696, 941
BspLI	GGNNCC	1 cut(s)	863
BspMAI	CTGCAG	1 cut(s)	232
BspPI	GGATC	2 cut(s)	856, 869
BspTNI	GGTCTC	1 cut(s)	721
BsrDI	GCAATG	2 cut(s)	18, 87
BsrI	ACTGG	4 cut(s)	148, 275, 487, 608
BssECI	CCNNGG	2 cut(s)	43, 757
BssMI	GATC	6 cut(s)	238, 452, 613, 644, 861, 889
BssT1I	CCWWGG	1 cut(s)	757
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	358
BstC8I	GCNNGC	4 cut(s)	200, 671, 726, 916
BstDEI	CTNAG	6 cut(s)	21, 87, 252, 683, 866, 928
BstEII	GGTNACC	1 cut(s)	481
BstF5I	GGATG	4 cut(s)	38, 391, 477, 517
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	6 cut(s)	241, 455, 616, 647, 864, 892
BstMAI	GTCTC	2 cut(s)	90, 721
BstMBI	GATC	6 cut(s)	238, 452, 613, 644, 861, 889
BstMCI	CGRYCG	2 cut(s)	647, 892
BstMWI	GCNNNNNNNGC	4 cut(s)	666, 687, 911, 932
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	809
BstPI	GGTNACC	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	4 cut(s)	89, 242, 562, 774
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	1 cut(s)	861
BstYI	RGATCY	1 cut(s)	861
BsuRI	GGCC	3 cut(s)	37, 681, 926
BtsCI	GGATG	4 cut(s)	38, 391, 477, 517
BtsIMutI	CAGTG	5 cut(s)	141, 420, 691, 756, 936
Cac8I	GCNNGC	4 cut(s)	200, 671, 726, 916
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	4 cut(s)	35, 47, 146, 272
Csp6I	GTAC	4 cut(s)	425, 541, 557, 754
CviAII	CATG	5 cut(s)	431, 456, 461, 720, 806
CviQI	GTAC	4 cut(s)	425, 541, 557, 754
DdeI	CTNAG	6 cut(s)	21, 87, 252, 683, 866, 928
DpnI	GATC	6 cut(s)	240, 454, 615, 646, 863, 891
DpnII	GATC	6 cut(s)	238, 452, 613, 644, 861, 889
DraIII	CACNNNGTG	1 cut(s)	842
DrdI	GACNNNNNNGTC	1 cut(s)	270
DseDI	GACNNNNNNGTC	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	757
Eco24I	GRGCYC	5 cut(s)	634, 675, 711, 879, 920
Eco31I	GGTCTC	1 cut(s)	721
Eco32I	GATATC	1 cut(s)	156
Eco47I	GGWCC	3 cut(s)	47, 146, 272
Eco57I	CTGAAG	3 cut(s)	210, 732, 766
Eco88I	CYCGRG	2 cut(s)	588, 710
Eco91I	GGTNACC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	757
EcoT38I	GRGCYC	5 cut(s)	634, 675, 711, 879, 920
ErhI	CCWWGG	1 cut(s)	757
FaeI	CATG	5 cut(s)	434, 459, 464, 723, 809
FatI	CATG	5 cut(s)	430, 455, 460, 719, 805
FauI	CCCGC	5 cut(s)	572, 662, 683, 907, 928
FauNDI	CATATG	1 cut(s)	502
FbaI	TGATCA	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	4 cut(s)	78, 231, 551, 763
FokI	GGATG	4 cut(s)	25, 398, 484, 504
FriOI	GRGCYC	5 cut(s)	634, 675, 711, 879, 920
Fsp4HI	GCNGC	4 cut(s)	78, 231, 551, 763
FspBI	CTAG	3 cut(s)	204, 296, 554
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	4 cut(s)	78, 231, 551, 763
HaeIII	GGCC	3 cut(s)	37, 681, 926
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	5 cut(s)	434, 459, 464, 723, 809
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	514, 732
HphI	GGTGA	4 cut(s)	475, 476, 727, 761
Hpy166II	GTNNAC	5 cut(s)	18, 61, 122, 754, 788
Hpy188I	TCNGA	2 cut(s)	190, 318
Hpy188III	TCNNGA	4 cut(s)	71, 89, 521, 625
Hpy8I	GTNNAC	5 cut(s)	18, 61, 122, 754, 788
HpyAV	CCTTC	5 cut(s)	159, 185, 461, 748, 782
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	7 cut(s)	11, 77, 170, 230, 389, 796, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	666, 687, 911, 932
HpyF3I	CTNAG	6 cut(s)	21, 87, 252, 683, 866, 928
Hsp92II	CATG	5 cut(s)	434, 459, 464, 723, 809
HspAI	GCGC	1 cut(s)	493
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	6 cut(s)	238, 452, 613, 644, 861, 889
Lsp1109I	GCAGC	4 cut(s)	89, 242, 562, 774
LweI	GCATC	3 cut(s)	64, 179, 376
MaeI	CTAG	3 cut(s)	204, 296, 554
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	6 cut(s)	240, 454, 615, 646, 863, 891
MboI	GATC	6 cut(s)	238, 452, 613, 644, 861, 889
MboII	GAAGA	3 cut(s)	65, 359, 487
MflI	RGATCY	1 cut(s)	861
MhlI	GDGCHC	5 cut(s)	634, 675, 711, 879, 920
MluCI	AATT	4 cut(s)	133, 445, 598, 822
MlyI	GAGTC	1 cut(s)	523
MnlI	CCTC	9 cut(s)	247, 276, 295, 517, 597, 621, 692, 706, 937
MseI	TTAA	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	567
MspR9I	CCNGG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	765
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	4 cut(s)	666, 687, 911, 932
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	6 cut(s)	238, 452, 613, 644, 861, 889
NlaIII	CATG	5 cut(s)	434, 459, 464, 723, 809
NlaIV	GGNNCC	1 cut(s)	863
NmuCI	GTSAC	1 cut(s)	481
NspI	RCATGY	1 cut(s)	809
PaeR7I	CTCGAG	2 cut(s)	588, 710
PcsI	WCGNNNNNNNCGW	2 cut(s)	640, 885
PctI	GAATGC	1 cut(s)	765
PfeI	GAWTC	1 cut(s)	732
PkrI	GCNGC	4 cut(s)	79, 232, 552, 764
Ple19I	CGATCG	2 cut(s)	647, 892
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
PshBI	ATTAAT	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	43
PspEI	GGTNACC	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	863
PspPI	GGNCC	4 cut(s)	35, 47, 146, 272
PspXI	VCTCGAGB	2 cut(s)	588, 710
PstI	CTGCAG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	861
PvuI	CGATCG	2 cut(s)	647, 892
RsaI	GTAC	4 cut(s)	426, 542, 558, 755
RsaNI	GTAC	4 cut(s)	425, 541, 557, 754
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	4 cut(s)	78, 231, 551, 763
Sau3AI	GATC	6 cut(s)	238, 452, 613, 644, 861, 889
Sau96I	GGNCC	4 cut(s)	35, 47, 146, 272
ScaI	AGTACT	2 cut(s)	426, 558
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	5 cut(s)	634, 675, 711, 879, 920
SfaNI	GCATC	3 cut(s)	64, 179, 376
SfcI	CTRYAG	1 cut(s)	228
Sfr274I	CTCGAG	2 cut(s)	588, 710
SinI	GGWCC	3 cut(s)	47, 146, 272
SlaI	CTCGAG	2 cut(s)	588, 710
SmlI	CTYRAG	2 cut(s)	588, 710
SmoI	CTYRAG	2 cut(s)	588, 710
Sse9I	AATT	4 cut(s)	133, 445, 598, 822
SsiI	CCGC	7 cut(s)	565, 669, 690, 744, 778, 914, 935
SspMI	CTAG	3 cut(s)	204, 296, 554
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	757
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	6 cut(s)	152, 589, 624, 643, 711, 888
TasI	AATT	4 cut(s)	133, 445, 598, 822
TatI	WGTACW	2 cut(s)	424, 556
TfiI	GAWTC	1 cut(s)	732
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	5 cut(s)	148, 420, 691, 756, 936
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	4 cut(s)	77, 230, 550, 762
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	3 cut(s)	419, 488, 519
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	5 cut(s)	148, 420, 691, 756, 936
VpaK11BI	GGWCC	3 cut(s)	47, 146, 272
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	1 cut(s)	598
XceI	RCATGY	1 cut(s)	809
XhoI	CTCGAG	2 cut(s)	588, 710
XmiI	GTMKAC	1 cut(s)	121
XspI	CTAG	3 cut(s)	204, 296, 554
ZrmI	AGTACT	2 cut(s)	426, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.