Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014671

Physical Location & Seq

Genomic Coordinates Reverse (-)

57268604 .. 57271497

Gene Structure 2894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGTGATTGGAGTTATTTTGGTGATCTAAACATTGAGGATTTTGTGATGTGTAGTATGCTTGCATTTATTGGATCAATAGATGTAAGTCCTGATACATACCTCCTTCATTTGGAACTGCTTAACTTCATGCTGATTGCAATGTCAACTCAGCTTCATTCTGGGCCATCTCCAGGACCAGAAGATGTGAACCCAGTTCTTGATGCAGCAATGTCTCAGGAAAGCTCGTTGGTTATCTCGGTTGTTCGTAGACTGAAGCCAGCCTGGTGTTATACAAAGACAAATTTTATGTTATTACCATTCAACTTTCTCGTCAGTTCAAGTGGTGAACGCTCAAGAAGTCTTTTGGCAGACTGCAGTCTCCATGTGCTACTTATTCTCACTCATTATTATAAATGTGTTGTGGGCAACGAGCCAATAACAGATAAAAGTAATGACACCACTACTTCAAATTCGCTTTTGAAAGGGAGTAGATATCTTTCTGACAACCCTTACTGTAAGGCCGTGGAACATGCAACAGATGTTGAATTTGATCGTGTAGATACTGAGGGTACTGGATCTAGTGGTCCAGTTTTGAGGTTACCTTATTGCTTCCTTGTTCGATACCCGTGGAATTACTTGACTGATGAGGCTGCTGCACTTTTGCTTTACTCTTTATTGCAAGGAAATGCTGACTTTCTCGAGTATGTCTTGGTGCGAACTGATTTTTGTAAGACCTTGCTATTTCAATTACATGATGTTTATCTCCATACAACTTGTCTAGCAACTTCGGCAAACATGGCACCTCATGTCCACCGTTTGAGTGCATATGCATCCCAGAGATTGGTCAGCCTATTTGACACTGCTACAACAGAAACATTTGCAATACAAGCATCCAATCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dymeclin

Protein Analysis

296

Amino Acids

32.95

Weight (kDa)

4.97

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dymeclin	PF09742	15 - 237	2.4e-28	Dyggve-Melchior-Clausen syndrome protein
Dymeclin	PF09742	243 - 291	1.3e-13	Dyggve-Melchior-Clausen syndrome protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33161 FvH4_4g01230
rosa_chinensis	RchiOBHm_Chr4g0393591 RchiOBHm_Chr4g0393611
rosa_laevigata	RLG00000009745 RLG00000009746
rosa_multiflora	Rmu_co8286683.1_g000001 Rmu_sc0000131.1_g000053 Rmu_sc0001089.1_g000030 Rmu_sc0001089.1_g000031 Rmu_sc0023155.1_g000001
rosa_samantha	Rh4BG044500 Rh4CG321200 Rh4CG321300 Rh4DG045100 Rh6AG189000
rosa_wichuraiana	Rw2G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
AccB1I	GGYRCC	1 cut(s)	781
AccB7I	CCANNNNNTGG	1 cut(s)	823
AccI	GTMKAC	1 cut(s)	250
AclWI	GGATC	2 cut(s)	82, 565
AcsI	RAATTY	3 cut(s)	283, 451, 527
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	3 cut(s)	112, 173, 823
AgsI	TTSAA	6 cut(s)	304, 321, 450, 463, 527, 728
AjnI	CCWGG	2 cut(s)	172, 263
AluBI	AGCT	2 cut(s)	154, 225
AluI	AGCT	2 cut(s)	154, 225
Alw26I	GTCTC	2 cut(s)	219, 365
AlwI	GGATC	2 cut(s)	82, 565
Ama87I	CYCGRG	1 cut(s)	680
AoxI	GGCC	2 cut(s)	164, 501
ApeKI	GCWGC	3 cut(s)	206, 632, 635
ApoI	RAATTY	3 cut(s)	283, 451, 527
AspS9I	GGNCC	3 cut(s)	164, 176, 566
AsuHPI	GGTGA	3 cut(s)	17, 35, 338
AvaI	CYCGRG	1 cut(s)	680
AvaII	GGWCC	2 cut(s)	176, 566
BanI	GGYRCC	1 cut(s)	781
BbvI	GCAGC	3 cut(s)	218, 619, 622
BccI	CCATC	1 cut(s)	175
BceAI	ACGGC	1 cut(s)	488
BciT130I	CCWGG	2 cut(s)	174, 265
BcoDI	GTCTC	2 cut(s)	219, 365
BfaI	CTAG	2 cut(s)	561, 761
BfmI	CTRYAG	1 cut(s)	355
BisI	GCNGC	3 cut(s)	207, 633, 636
BlsI	GCNGC	3 cut(s)	208, 634, 637
Bme1390I	CCNGG	2 cut(s)	174, 265
Bme18I	GGWCC	2 cut(s)	176, 566
BmeT110I	CYCGRG	1 cut(s)	680
BmgT120I	GGNCC	3 cut(s)	164, 176, 566
BmiI	GGNNCC	1 cut(s)	783
BmrFI	CCNGG	2 cut(s)	174, 265
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	3 cut(s)	193, 821, 881
BmuI	ACTGGG	1 cut(s)	188
BoxI	GACNNNNGTC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	741
BsaJI	CCNNGG	2 cut(s)	504, 608
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 173, 823
Bse1I	ACTGG	3 cut(s)	194, 559, 569
Bse3DI	GCAATG	2 cut(s)	147, 216
Bse8I	GATNNNNATC	1 cut(s)	741
BseBI	CCWGG	2 cut(s)	174, 265
BseDI	CCNNGG	2 cut(s)	504, 608
BseGI	GGATG	2 cut(s)	812, 872
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	3 cut(s)	112, 173, 823
BseMI	GCAATG	2 cut(s)	147, 216
BseMII	CTCAG	3 cut(s)	164, 230, 537
BseNI	ACTGG	3 cut(s)	194, 559, 569
BseXI	GCAGC	3 cut(s)	218, 619, 622
BsgI	GTGCAG	1 cut(s)	621
BshFI	GGCC	2 cut(s)	166, 503
BshNI	GGYRCC	1 cut(s)	781
BsiHKCI	CYCGRG	1 cut(s)	680
BslI	CCNNNNNNNGG	3 cut(s)	112, 173, 823
BsmAI	GTCTC	2 cut(s)	219, 365
BsnI	GGCC	2 cut(s)	166, 503
BsoBI	CYCGRG	1 cut(s)	680
Bsp143I	GATC	4 cut(s)	25, 74, 532, 557
BspANI	GGCC	2 cut(s)	166, 503
BspCNI	CTCAG	3 cut(s)	163, 229, 538
BspLI	GGNNCC	1 cut(s)	783
BspMAI	CTGCAG	1 cut(s)	359
BspPI	GGATC	2 cut(s)	82, 565
BspT107I	GGYRCC	1 cut(s)	781
BsrDI	GCAATG	2 cut(s)	147, 216
BsrI	ACTGG	3 cut(s)	194, 559, 569
BssECI	CCNNGG	2 cut(s)	504, 608
BssMI	GATC	4 cut(s)	25, 74, 532, 557
Bst2UI	CCWGG	2 cut(s)	174, 265
Bst4CI	ACNGT	2 cut(s)	497, 797
BstC8I	GCNNGC	2 cut(s)	63, 261
BstDEI	CTNAG	3 cut(s)	150, 216, 546
BstDSI	CCRYGG	2 cut(s)	504, 608
BstEII	GGTNACC	1 cut(s)	579
BstF5I	GGATG	2 cut(s)	812, 872
BstKTI	GATC	4 cut(s)	28, 77, 535, 560
BstMAI	GTCTC	2 cut(s)	219, 365
BstMBI	GATC	4 cut(s)	25, 74, 532, 557
BstMWI	GCNNNNNNNGC	3 cut(s)	770, 779, 869
BstNI	CCWGG	2 cut(s)	174, 265
BstNSI	RCATGY	1 cut(s)	515
BstPAI	GACNNNNGTC	1 cut(s)	357
BstPI	GGTNACC	1 cut(s)	579
BstSCI	CCNGG	2 cut(s)	172, 263
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	3 cut(s)	218, 619, 622
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BsuRI	GGCC	2 cut(s)	166, 503
BtgI	CCRYGG	2 cut(s)	504, 608
BtsCI	GGATG	2 cut(s)	812, 872
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	1 cut(s)	840
Cac8I	GCNNGC	2 cut(s)	63, 261
Cfr13I	GGNCC	3 cut(s)	164, 176, 566
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	6 cut(s)	130, 365, 512, 734, 778, 788
CviJI	RGCY	9 cut(s)	154, 166, 225, 259, 263, 415, 503, 632, 831
CviKI_1	RGCY	9 cut(s)	154, 166, 225, 259, 263, 415, 503, 632, 831
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	3 cut(s)	150, 216, 546
DpnI	GATC	4 cut(s)	27, 76, 534, 559
DpnII	GATC	4 cut(s)	25, 74, 532, 557
Eco32I	GATATC	1 cut(s)	476
Eco47I	GGWCC	2 cut(s)	176, 566
Eco57I	CTGAAG	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	680
Eco91I	GGTNACC	1 cut(s)	579
EcoO65I	GGTNACC	1 cut(s)	579
EcoRII	CCWGG	2 cut(s)	172, 263
EcoRV	GATATC	1 cut(s)	476
EcoT22I	ATGCAT	1 cut(s)	814
FaeI	CATG	6 cut(s)	133, 368, 515, 737, 781, 791
FatI	CATG	6 cut(s)	129, 364, 511, 733, 777, 787
FauNDI	CATATG	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	207, 633, 636
FokI	GGATG	2 cut(s)	799, 859
Fsp4HI	GCNGC	3 cut(s)	207, 633, 636
FspBI	CTAG	2 cut(s)	561, 761
GluI	GCNGC	3 cut(s)	207, 633, 636
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	166, 503
Hin1II	CATG	6 cut(s)	133, 368, 515, 737, 781, 791
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HphI	GGTGA	3 cut(s)	17, 35, 338
Hpy166II	GTNNAC	5 cut(s)	147, 190, 251, 329, 793
Hpy188I	TCNGA	1 cut(s)	484
Hpy188III	TCNNGA	5 cut(s)	92, 200, 218, 336, 680
Hpy8I	GTNNAC	5 cut(s)	147, 190, 251, 329, 793
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	497, 797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	770, 779, 869
HpyF3I	CTNAG	3 cut(s)	150, 216, 546
Hsp92II	CATG	6 cut(s)	133, 368, 515, 737, 781, 791
Kzo9I	GATC	4 cut(s)	25, 74, 532, 557
Lsp1109I	GCAGC	3 cut(s)	218, 619, 622
LweI	GCATC	3 cut(s)	193, 821, 881
MaeI	CTAG	2 cut(s)	561, 761
MaeIII	GTNAC	1 cut(s)	579
MalI	GATC	4 cut(s)	27, 76, 534, 559
MboI	GATC	4 cut(s)	25, 74, 532, 557
MboII	GAAGA	2 cut(s)	194, 874
MflI	RGATCY	1 cut(s)	557
MluCI	AATT	5 cut(s)	283, 451, 527, 613, 728
MnlI	CCTC	6 cut(s)	31, 113, 541, 570, 622, 795
Mph1103I	ATGCAT	1 cut(s)	814
MseI	TTAA	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	174, 265
MvaI	CCWGG	2 cut(s)	174, 265
MwoI	GCNNNNNNNGC	3 cut(s)	770, 779, 869
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	4 cut(s)	25, 74, 532, 557
NlaIII	CATG	6 cut(s)	133, 368, 515, 737, 781, 791
NlaIV	GGNNCC	1 cut(s)	783
NsiI	ATGCAT	1 cut(s)	814
NspI	RCATGY	1 cut(s)	515
PaeR7I	CTCGAG	1 cut(s)	680
PflMI	CCANNNNNTGG	1 cut(s)	823
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	208, 634, 637
PshAI	GACNNNNGTC	1 cut(s)	357
PsiI	TTATAA	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	172, 263
PspEI	GGTNACC	1 cut(s)	579
PspGI	CCWGG	2 cut(s)	172, 263
PspN4I	GGNNCC	1 cut(s)	783
PspPI	GGNCC	3 cut(s)	164, 176, 566
PstI	CTGCAG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	557
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	3 cut(s)	207, 633, 636
Sau3AI	GATC	4 cut(s)	25, 74, 532, 557
Sau96I	GGNCC	3 cut(s)	164, 176, 566
ScrFI	CCNGG	2 cut(s)	174, 265
SetI	ASST	7 cut(s)	105, 156, 227, 581, 586, 719, 787
SfaNI	GCATC	3 cut(s)	193, 821, 881
SfcI	CTRYAG	1 cut(s)	355
Sfr274I	CTCGAG	1 cut(s)	680
SinI	GGWCC	2 cut(s)	176, 566
SlaI	CTCGAG	1 cut(s)	680
SmlI	CTYRAG	2 cut(s)	334, 680
SmoI	CTYRAG	2 cut(s)	334, 680
Sse9I	AATT	5 cut(s)	283, 451, 527, 613, 728
SspMI	CTAG	2 cut(s)	561, 761
StyD4I	CCNGG	2 cut(s)	172, 263
TaaI	ACNGT	2 cut(s)	497, 797
TaqI	TCGA	2 cut(s)	601, 681
TasI	AATT	5 cut(s)	283, 451, 527, 613, 728
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	847
TseI	GCWGC	3 cut(s)	206, 632, 635
TspDTI	ATGAA	3 cut(s)	98, 118, 146
TspRI	CASTG	1 cut(s)	847
Van91I	CCANNNNNTGG	1 cut(s)	823
VpaK11BI	GGWCC	2 cut(s)	176, 566
XapI	RAATTY	3 cut(s)	283, 451, 527
XceI	RCATGY	1 cut(s)	515
XhoI	CTCGAG	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	2 cut(s)	561, 761
Zsp2I	ATGCAT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.