Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Reverse (-)

20202049 .. 20202309

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37376

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCAGACCTGGTTCTCTGCCCTGACCGAACCCAAAACTCTACCACCCGATCCTTCTCCTCCTCCACGCCGTCAACCACCTCCTCCTCCCAATAGCCACCAACCTTGGCGGGCCTCCGTGCTCACCTCGCCGCCGAGTCTCCCACTCACTGAATTCGTCGAAGGCGAAGGTCCGTACTCCGTGGAGGTCGGCACGAAGAAGAAGCTGATACCGAAGCCAAAATGGATGGAGTTGATCCCGGCCGGCGAGAAGTACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

86

Amino Acids

9.63

Weight (kDa)

9.1

Isoelectric Point (pI)

66.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	109, 131
AclWI	GGATC	2 cut(s)	44, 229
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	2 cut(s)	176, 254
AflIII	ACRYGT	1 cut(s)	255
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	2 cut(s)	44, 229
AoxI	GGCC	2 cut(s)	111, 240
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	111, 170
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	123
BccI	CCATC	1 cut(s)	220
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	2 cut(s)	10, 239
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	111, 170
BmrFI	CCNGG	2 cut(s)	10, 239
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	104, 180
Bse118I	RCCGGY	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	104, 180
BseGI	GGATG	1 cut(s)	231
BseRI	GAGGAG	4 cut(s)	48, 51, 72, 75
BseX3I	CGGCCG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	113, 242
BsiEI	CGRYCG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	239, 243
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	113, 242
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	49, 234
BspACI	CCGC	2 cut(s)	109, 131
BspANI	GGCC	2 cut(s)	113, 242
BspPI	GGATC	2 cut(s)	44, 229
BsrFI	RCCGGY	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	104, 180
BssMI	GATC	2 cut(s)	49, 234
BssT1I	CCWWGG	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	111, 244
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	231
BstKTI	GATC	2 cut(s)	52, 237
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	49, 234
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	8, 237
BstZI	CGGCCG	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	113, 242
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	111, 244
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	111, 170
CsiI	ACCWGGT	1 cut(s)	8
Csp6I	GTAC	2 cut(s)	175, 253
CspCI	CAANNNNNGTGG	2 cut(s)	86, 121
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	5 cut(s)	96, 113, 205, 217, 242
CviKI_1	RGCY	5 cut(s)	96, 113, 205, 217, 242
CviQI	GTAC	2 cut(s)	175, 253
DpnI	GATC	2 cut(s)	51, 236
DpnII	GATC	2 cut(s)	49, 234
EaeI	YGGCCR	1 cut(s)	240
EagI	CGGCCG	1 cut(s)	240
EclXI	CGGCCG	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	170
Eco52I	CGGCCG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	1 cut(s)	259
FaiI	YATR	1 cut(s)	257
FatI	CATG	1 cut(s)	255
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	131
GluI	GCNGC	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	113, 242
HapII	CCGG	2 cut(s)	239, 243
Hin1II	CATG	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	2 cut(s)	239, 243
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	74
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	3 cut(s)	63, 155, 161
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	259
KroI	GCCGGC	1 cut(s)	242
KroNI	GCCGGC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	49, 234
LpnPI	CCDG	4 cut(s)	22, 35, 252, 256
MabI	ACCWGGT	1 cut(s)	8
MalI	GATC	2 cut(s)	51, 236
MboI	GATC	2 cut(s)	49, 234
MboII	GAAGA	2 cut(s)	208, 211
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	8 cut(s)	69, 72, 90, 93, 96, 124, 136, 178
MroNI	GCCGGC	1 cut(s)	242
MspI	CCGG	2 cut(s)	239, 243
MspR9I	CCNGG	2 cut(s)	10, 239
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	127
NaeI	GCCGGC	1 cut(s)	244
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	49, 234
NgoMIV	GCCGGC	1 cut(s)	242
NlaIII	CATG	1 cut(s)	259
NmeAIII	GCCGAG	1 cut(s)	159
NspI	RCATGY	1 cut(s)	259
PciI	ACATGT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PscI	ACATGT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspPI	GGNCC	2 cut(s)	111, 170
RsaI	GTAC	2 cut(s)	176, 254
RsaNI	GTAC	2 cut(s)	175, 253
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	49, 234
Sau96I	GGNCC	2 cut(s)	111, 170
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	10, 239
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	7 cut(s)	11, 82, 106, 128, 172, 189, 207
SexAI	ACCWGGT	1 cut(s)	8
SinI	GGWCC	1 cut(s)	170
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	2 cut(s)	109, 131
StyD4I	CCNGG	2 cut(s)	8, 237
StyI	CCWWGG	1 cut(s)	104
TaqI	TCGA	1 cut(s)	159
TaqII	GACCGA	1 cut(s)	41
TasI	AATT	1 cut(s)	152
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	1 cut(s)	133
TscAI	CASTG	1 cut(s)	154
TspGWI	ACGGA	3 cut(s)	106, 162, 169
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.