Rorug04G0123400

Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
19562901 .. 19565269
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0123400.1

Sequence Viewer

Length: 1380 bp
ATGGCCGGCCAAAACCCTAAACAACCCTCGACTCAGTATCACCACCATGTCGCCGCTTTGGCCTTCCCTTACGGAACCCATGCAGGCCCTCTTCTAAGCCTCGTTCTTCGACTCGCTGCCGCCGCACCCGACACAATCTTCTCCTTCATTACTACTTCTAAAGCCAACAGCTCCCTCTTCTCGCCCGCCTCCAAGGCCTCGGCATTCCTTAATGTGAAGGCCTACGACGTCCCGGATGGGTTGCCCGAGGGTTTCTTGCCCTCCGGCCACCCAGAGCAGGCTATTGGCTTCTTTCTCAAGGCGGCCCCGGCCAACTTTAGGAGCGCAATGAAGGAGGCTGAGGCGGGTTCCGGGCTGCAGATAGGGTGTCTGGTGACGGATGCTTTCTTTTGGTTCGCGGGAGATATGGCGGAGGAGATGAAGCTTCCCTGGGTACCACTTTGGACGGCTGGTCCTCGTTCCCTTCTTGTTCATGCTGCCACAGACTTAATACGACAAAGGGTACTTGGAAACGATGAGAAAACCCTCGAGTTCCTTCCTGGATTTTCCAAACTTGAGGTAGCTGATTTACCTGAGGGAGTGGTATCAGGGAATTTAGAGTCACCAATATCATCCCTGTTACACAAAATGGGACAAAAGCTGCCAAAGGCGGCCGCGGTTGCCATTAACTCATTTGAAGAAGCAGAACCGGAAGTTGTGAACGAGCTCAAATCAAGATTCCAGAAGCTCCTCAATGTTGGACCCTTCAATCTAGCATCGCCGTCGCCACCATTACTCAAGGATGACAGCGGTTGCTTGGAGTGGTTGGACAAGCATAAGCCTGCATCGGTGGTATATATCAGCTTTGGAAGTGTGGTGAGACCACCACCTCATGAGCTAGCAGCATTTGCAGAAGCTTTGATTGAAAGTGCGTTCCCATTTATTTGGTCATTTAGGGGCAACCCAGATGACATATTGCCCAATGGGTGTGACAAGAGTAGCCTAAATGGAAAAATAGTTTCATGGGCTCCGCAGGTACAAATTTTAGAGAATGCTGCAGTTGGAGTTTTTGTGACACATTGCGGGTGGAACTCGACTTTGGAGAGTATAGTTGGTGGTGTGCCTATGATAGGCAGGCCATTTTTTGGAGACCAAATCCTGAACATGAGGACTGTGGAGGCTGTTTGGGGGATTGGTGTGGGAATTGAGGGAGGGGTCCTTACAAAACATGGAGCAATTAAGGCATTGGAACTAATTTTGAGGGGTAAAGCAGGAAATGAAATGAGAGAAAAAATAAAAGTTCTAAAAAATCTAGCTCAATCTGCTGTTGAAGGTGATGGTAGCTCTTCCAAAGCTTTTAATAGCTTGGTTGACATAGCAACCAAGCATGAAGAAGTTTGA

Protein Analysis

459

Amino Acids

49.15

Weight (kDa)

5.87

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 119 - 417 3.3e-33 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
Acc36I ACCTGC 1 cut(s) 1003
Acc65I GGTACC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 433
AccB7I CCANNNNNTGG 1 cut(s) 1124
AccII CGCG 2 cut(s) 398, 656
AcoI YGGCCR 5 cut(s) 3, 7, 265, 309, 651
AcsI RAATTY 2 cut(s) 592, 1020
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 3 cut(s) 435, 504, 1017
AfiI CCNNNNNNNGG 4 cut(s) 277, 318, 1109, 1124
AgsI TTSAA 4 cut(s) 677, 748, 905, 1310
AhdI GACNNNNNGTC 1 cut(s) 450
AjnI CCWGG 2 cut(s) 428, 538
AjuI GAANNNNNNNTTGG 2 cut(s) 1061, 1093
Alw21I GWGCWC 1 cut(s) 708
Alw26I GTCTC 2 cut(s) 853, 1122
Ama87I CYCGRG 2 cut(s) 245, 527
ApeKI GCWGC 6 cut(s) 116, 355, 476, 640, 881, 1034
ApoI RAATTY 2 cut(s) 592, 1020
Asp718I GGTACC 1 cut(s) 433
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 5 cut(s) 86, 304, 452, 740, 1195
AsuC2I CCSGG 3 cut(s) 233, 308, 352
AsuHPI GGTGA 5 cut(s) 32, 385, 594, 868, 1325
AsuNHI GCTAGC 1 cut(s) 877
AvaI CYCGRG 2 cut(s) 245, 527
AvaII GGWCC 3 cut(s) 452, 740, 1195
AxyI CCTNAGG 1 cut(s) 573
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 2 cut(s) 708, 1009
Bbv12I GWGCWC 1 cut(s) 708
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 6 cut(s) 103, 342, 463, 627, 893, 1021
BccI CCATC 2 cut(s) 230, 1310
BceAI ACGGC 2 cut(s) 462, 745
BcgI CGANNNNNNTGC 2 cut(s) 744, 778
BciT130I CCWGG 2 cut(s) 430, 540
BcnI CCSGG 3 cut(s) 233, 308, 352
BcoDI GTCTC 2 cut(s) 853, 1122
BfaI CTAG 3 cut(s) 752, 878, 1292
BfmI CTRYAG 2 cut(s) 356, 1035
BfuAI ACCTGC 1 cut(s) 1003
BglI GCCNNNNNGGC 2 cut(s) 59, 194
Bme1390I CCNGG 5 cut(s) 233, 308, 352, 430, 540
Bme18I GGWCC 3 cut(s) 452, 740, 1195
BmeRI GACNNNNNGTC 1 cut(s) 450
BmeT110I CYCGRG 2 cut(s) 245, 527
BmgT120I GGNCC 5 cut(s) 86, 304, 452, 740, 1195
BmiI GGNNCC 7 cut(s) 76, 306, 349, 435, 742, 1008, 1196
BmrFI CCNGG 5 cut(s) 233, 308, 352, 430, 540
BmsI GCATC 3 cut(s) 370, 764, 833
BmtI GCTAGC 1 cut(s) 881
Bpu10I CCTNAGC 1 cut(s) 339
BpuEI CTTGAG 3 cut(s) 281, 575, 761
BpuMI CCSGG 3 cut(s) 233, 308, 352
BsaHI GRCGYC 1 cut(s) 228
BsaI GGTCTC 2 cut(s) 853, 1122
BsaJI CCNNGG 7 cut(s) 192, 198, 246, 306, 428, 429, 654
BsaWI WCCGGW 1 cut(s) 688
BsaXI ACNNNNNCTCC 2 cut(s) 1035, 1065
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 318, 1109, 1124
Bse118I RCCGGY 1 cut(s) 5
Bse21I CCTNAGG 1 cut(s) 573
Bse3DI GCAATG 2 cut(s) 333, 1057
BseBI CCWGG 2 cut(s) 430, 540
BseDI CCNNGG 7 cut(s) 192, 198, 246, 306, 428, 429, 654
BseGI GGATG 4 cut(s) 241, 385, 611, 787
BseLI CCNNNNNNNGG 4 cut(s) 277, 318, 1109, 1124
BseMI GCAATG 2 cut(s) 333, 1057
BseMII CTCAG 3 cut(s) 47, 330, 564
BseRI GAGGAG 2 cut(s) 428, 719
BseX3I CGGCCG 1 cut(s) 651
BseXI GCAGC 6 cut(s) 103, 342, 463, 627, 893, 1021
Bsh1236I CGCG 2 cut(s) 398, 656
Bsh1285I CGRYCG 1 cut(s) 654
BshNI GGYRCC 1 cut(s) 433
BsiEI CGRYCG 1 cut(s) 654
BsiHKAI GWGCWC 1 cut(s) 708
BsiHKCI CYCGRG 2 cut(s) 245, 527
BsiSI CCGG 6 cut(s) 6, 233, 264, 308, 351, 689
BslFI GGGAC 2 cut(s) 215, 645
BslI CCNNNNNNNGG 4 cut(s) 277, 318, 1109, 1124
BsmAI GTCTC 2 cut(s) 853, 1122
BsmFI GGGAC 2 cut(s) 215, 645
BsmI GAATGC 2 cut(s) 203, 1036
Bso31I GGTCTC 2 cut(s) 853, 1122
BsoBI CYCGRG 2 cut(s) 245, 527
Bsp1286I GDGCHC 2 cut(s) 708, 1009
BspCNI CTCAG 3 cut(s) 46, 331, 565
BspFNI CGCG 2 cut(s) 398, 656
BspHI TCATGA 1 cut(s) 871
BspLI GGNNCC 7 cut(s) 76, 306, 349, 435, 742, 1008, 1196
BspMAI CTGCAG 2 cut(s) 360, 1039
BspMI ACCTGC 1 cut(s) 1003
BspOI GCTAGC 1 cut(s) 881
BspQI GCTCTTC 1 cut(s) 1330
BspT107I GGYRCC 1 cut(s) 433
BspTNI GGTCTC 2 cut(s) 853, 1122
BsrDI GCAATG 2 cut(s) 333, 1057
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 7 cut(s) 192, 198, 246, 306, 428, 429, 654
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 430, 540
Bst4CI ACNGT 1 cut(s) 1153
Bst6I CTCTTC 3 cut(s) 96, 182, 1330
BstACI GRCGYC 1 cut(s) 228
BstAPI GCANNNNNTGC 1 cut(s) 887
BstC8I GCNNGC 7 cut(s) 7, 85, 186, 279, 822, 879, 1115
BstDEI CTNAG 4 cut(s) 33, 95, 339, 573
BstDSI CCRYGG 1 cut(s) 654
BstENI CCTNNNNNAGG 1 cut(s) 1107
BstF5I GGATG 4 cut(s) 241, 385, 611, 787
BstFNI CGCG 2 cut(s) 398, 656
BstHHI GCGC 1 cut(s) 326
BstMAI GTCTC 2 cut(s) 853, 1122
BstMCI CGRYCG 1 cut(s) 654
BstMWI GCNNNNNNNGC 8 cut(s) 59, 122, 194, 308, 659, 887, 1220, 1301
BstNI CCWGG 2 cut(s) 430, 540
BstSCI CCNGG 5 cut(s) 231, 306, 350, 428, 538
BstSFI CTRYAG 2 cut(s) 356, 1035
BstUI CGCG 2 cut(s) 398, 656
BstV1I GCAGC 6 cut(s) 103, 342, 463, 627, 893, 1021
BstXI CCANNNNNNTGG 1 cut(s) 924
BstZI CGGCCG 1 cut(s) 651
Bsu36I CCTNAGG 1 cut(s) 573
BtgI CCRYGG 1 cut(s) 654
BtgZI GCGATG 1 cut(s) 741
BtsCI GGATG 4 cut(s) 241, 385, 611, 787
BveI ACCTGC 1 cut(s) 1003
Cac8I GCNNGC 7 cut(s) 7, 85, 186, 279, 822, 879, 1115
CciI TCATGA 1 cut(s) 871
CciNI GCGGCCGC 1 cut(s) 651
CfoI GCGC 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 5 cut(s) 86, 304, 452, 740, 1195
Cfr42I CCGCGG 1 cut(s) 657
Csp6I GTAC 3 cut(s) 434, 503, 1016
CviAII CATG 8 cut(s) 47, 80, 473, 872, 1002, 1144, 1208, 1367
CviQI GTAC 3 cut(s) 434, 503, 1016
DdeI CTNAG 4 cut(s) 33, 95, 339, 573
DriI GACNNNNNGTC 1 cut(s) 450
EaeI YGGCCR 5 cut(s) 3, 7, 265, 309, 651
EagI CGGCCG 1 cut(s) 651
Eam1104I CTCTTC 3 cut(s) 96, 182, 1330
Eam1105I GACNNNNNGTC 1 cut(s) 450
EarI CTCTTC 3 cut(s) 96, 182, 1330
EciI GGCGGA 1 cut(s) 425
Ecl136II GAGCTC 1 cut(s) 706
EclXI CGGCCG 1 cut(s) 651
Eco130I CCWWGG 1 cut(s) 192
Eco147I AGGCCT 2 cut(s) 197, 221
Eco24I GRGCYC 2 cut(s) 708, 1009
Eco31I GGTCTC 2 cut(s) 853, 1122
Eco47I GGWCC 3 cut(s) 452, 740, 1195
Eco52I CGGCCG 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 706
Eco81I CCTNAGG 1 cut(s) 573
Eco88I CYCGRG 2 cut(s) 245, 527
EcoICRI GAGCTC 1 cut(s) 706
EcoNI CCTNNNNNAGG 1 cut(s) 1107
EcoO109I RGGNCCY 2 cut(s) 86, 1195
EcoRII CCWGG 2 cut(s) 428, 538
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 2 cut(s) 708, 1009
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 8 cut(s) 50, 83, 476, 875, 1005, 1147, 1211, 1370
FaqI GGGAC 2 cut(s) 215, 645
FatI CATG 8 cut(s) 46, 79, 472, 871, 1001, 1143, 1207, 1366
FauI CCCGC 4 cut(s) 193, 337, 391, 1055
FokI GGATG 4 cut(s) 248, 392, 598, 794
FriOI GRGCYC 2 cut(s) 708, 1009
FseI GGCCGGCC 1 cut(s) 9
FspBI CTAG 3 cut(s) 752, 878, 1292
GlaI GCGC 1 cut(s) 325
HapII CCGG 6 cut(s) 6, 233, 264, 308, 351, 689
HhaI GCGC 1 cut(s) 326
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 8 cut(s) 50, 83, 476, 875, 1005, 1147, 1211, 1370
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HincII GTYRAC 1 cut(s) 1351
HindII GTYRAC 1 cut(s) 1351
HindIII AAGCTT 3 cut(s) 422, 894, 1332
HinfI GANTC 4 cut(s) 31, 111, 599, 717
HpaII CCGG 6 cut(s) 6, 233, 264, 308, 351, 689
HphI GGTGA 5 cut(s) 32, 385, 594, 868, 1325
Hpy166II GTNNAC 2 cut(s) 700, 1351
Hpy188III TCNNGA 4 cut(s) 714, 721, 872, 1138
Hpy8I GTNNAC 2 cut(s) 700, 1351
Hpy99I CGWCG 2 cut(s) 230, 766
HpyAV CCTTC 8 cut(s) 73, 154, 211, 325, 473, 545, 754, 1304
HpyCH4III ACNGT 1 cut(s) 1153
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 5 cut(s) 83, 358, 824, 890, 1037
HpyF10VI GCNNNNNNNGC 8 cut(s) 59, 122, 194, 308, 659, 887, 1220, 1301
HpyF3I CTNAG 4 cut(s) 33, 95, 339, 573
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 8 cut(s) 50, 83, 476, 875, 1005, 1147, 1211, 1370
HspAI GCGC 1 cut(s) 324
KpnI GGTACC 1 cut(s) 437
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
KspI CCGCGG 1 cut(s) 657
LguI GCTCTTC 1 cut(s) 1330
LmnI GCTCC 5 cut(s) 176, 321, 732, 1012, 1211
Lsp1109I GCAGC 6 cut(s) 103, 342, 463, 627, 893, 1021
LweI GCATC 3 cut(s) 370, 764, 833
MaeI CTAG 3 cut(s) 752, 878, 1292
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 5 cut(s) 373, 600, 618, 968, 1051
MboII GAAGA 6 cut(s) 83, 98, 130, 169, 689, 1317
MhlI GDGCHC 2 cut(s) 708, 1009
MluCI AATT 5 cut(s) 592, 1020, 1182, 1215, 1233
MlyI GAGTC 3 cut(s) 25, 105, 608
MmeI TCCRAC 3 cut(s) 718, 786, 1021
MroNI GCCGGC 1 cut(s) 5
MseI TTAA 5 cut(s) 210, 488, 666, 1218, 1338
MslI CAYNNNNRTG 1 cut(s) 45
MspA1I CMGCKG 2 cut(s) 656, 789
MspI CCGG 6 cut(s) 6, 233, 264, 308, 351, 689
MspR9I CCNGG 5 cut(s) 233, 308, 352, 430, 540
Mva1269I GAATGC 2 cut(s) 203, 1036
MvaI CCWGG 2 cut(s) 430, 540
MvnI CGCG 2 cut(s) 398, 656
MwoI GCNNNNNNNGC 8 cut(s) 59, 122, 194, 308, 659, 887, 1220, 1301
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 3 cut(s) 233, 308, 352
NgoMIV GCCGGC 1 cut(s) 5
NheI GCTAGC 1 cut(s) 877
NlaIII CATG 8 cut(s) 50, 83, 476, 875, 1005, 1147, 1211, 1370
NlaIV GGNNCC 7 cut(s) 76, 306, 349, 435, 742, 1008, 1196
NmeAIII GCCGAG 1 cut(s) 179
NmuCI GTSAC 4 cut(s) 373, 600, 968, 1051
NotI GCGGCCGC 1 cut(s) 651
PaeR7I CTCGAG 1 cut(s) 527
PagI TCATGA 1 cut(s) 871
PasI CCCWGGG 1 cut(s) 429
PceI AGGCCT 2 cut(s) 197, 221
PciSI GCTCTTC 1 cut(s) 1330
PctI GAATGC 2 cut(s) 203, 1036
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 717
PflMI CCANNNNNTGG 1 cut(s) 1124
PfoI TCCNGGA 2 cut(s) 231, 538
PleI GAGTC 3 cut(s) 25, 105, 607
PpsI GAGTC 3 cut(s) 25, 105, 607
PpuMI RGGWCCY 1 cut(s) 1195
Psp124BI GAGCTC 1 cut(s) 708
Psp5II RGGWCCY 1 cut(s) 1195
Psp6I CCWGG 2 cut(s) 428, 538
PspGI CCWGG 2 cut(s) 428, 538
PspN4I GGNNCC 7 cut(s) 76, 306, 349, 435, 742, 1008, 1196
PspPI GGNCC 5 cut(s) 86, 304, 452, 740, 1195
PspPPI RGGWCCY 1 cut(s) 1195
PspXI VCTCGAGB 1 cut(s) 527
PstI CTGCAG 2 cut(s) 360, 1039
RigI GGCCGGCC 1 cut(s) 9
RsaI GTAC 3 cut(s) 435, 504, 1017
RsaNI GTAC 3 cut(s) 434, 503, 1016
RseI CAYNNNNRTG 1 cut(s) 45
SacI GAGCTC 1 cut(s) 708
SacII CCGCGG 1 cut(s) 657
SapI GCTCTTC 1 cut(s) 1330
SaqAI TTAA 5 cut(s) 210, 488, 666, 1218, 1338
Sau96I GGNCC 5 cut(s) 86, 304, 452, 740, 1195
SchI GAGTC 3 cut(s) 25, 105, 608
ScrFI CCNGG 5 cut(s) 233, 308, 352, 430, 540
SduI GDGCHC 2 cut(s) 708, 1009
SfaNI GCATC 3 cut(s) 370, 764, 833
SfcI CTRYAG 2 cut(s) 356, 1035
Sfr274I CTCGAG 1 cut(s) 527
Sfr303I CCGCGG 1 cut(s) 657
SgrBI CCGCGG 1 cut(s) 657
SinI GGWCC 3 cut(s) 452, 740, 1195
SlaI CTCGAG 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 45
SmlI CTYRAG 4 cut(s) 296, 527, 554, 776
SmoI CTYRAG 4 cut(s) 296, 527, 554, 776
Sse9I AATT 5 cut(s) 592, 1020, 1182, 1215, 1233
SseBI AGGCCT 2 cut(s) 197, 221
SspMI CTAG 3 cut(s) 752, 878, 1292
SstI GAGCTC 1 cut(s) 708
StuI AGGCCT 2 cut(s) 197, 221
StyD4I CCNGG 5 cut(s) 231, 306, 350, 428, 538
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 1153
TaiI ACGT 1 cut(s) 231
TaqI TCGA 4 cut(s) 29, 109, 528, 1073
TasI AATT 5 cut(s) 592, 1020, 1182, 1215, 1233
TauI GCSGC 6 cut(s) 56, 122, 125, 305, 653, 656
TfiI GAWTC 1 cut(s) 717
Tru1I TTAA 5 cut(s) 210, 488, 666, 1218, 1338
Tru9I TTAA 5 cut(s) 210, 488, 666, 1218, 1338
TseFI GTSAC 4 cut(s) 373, 600, 968, 1051
TseI GCWGC 6 cut(s) 116, 355, 476, 640, 881, 1034
Tsp45I GTSAC 4 cut(s) 373, 600, 968, 1051
TspDTI ATGAA 6 cut(s) 136, 344, 434, 461, 990, 1272
TspGWI ACGGA 2 cut(s) 87, 392
Van91I CCANNNNNTGG 1 cut(s) 1124
VpaK11BI GGWCC 3 cut(s) 452, 740, 1195
XagI CCTNNNNNAGG 1 cut(s) 1107
XapI RAATTY 2 cut(s) 592, 1020
XhoI CTCGAG 1 cut(s) 527
XspI CTAG 3 cut(s) 752, 878, 1292
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.