Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Reverse (-)

16004292 .. 16004888

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00345570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCAGACCCGGTTCTCGACCCGACCCGAACCCAAAACTCCACCACCCGATCCTCCTCCTCCTCCACGTCATCAACCACCTCCTCCTCCCAATTGCTGCCAACCTTGGCTGGCCTCCGTGCTCACCTCACCGCCGAGTCTCCCACTCACCGAATTCGTCGAAGGCGAAGGTCCGTACTCCCGTGGAGGTCGGCACGAAGAAGAAGCCGCTACCGAAGCCAAAATGGATGGAGTTGATCCCGCCGGCGAGAAGTACATGCAGATTAAGAAGAAGCTCGGGGAATTGAAGCTCCACACAATCTACGAGGAGGCCAAGCATCCTATTCTTAGCGAGTGCTGGTCCCGGCGGTTTTGCAATGTGAAGACTTCTAGGACTCCGCCGTGGCCGGACCCCAATGAGCCGGAGAATGTGGCGGAGGCGATTGCGTCGTGGGGGTTGGATTATGTGGTGATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

152

Amino Acids

17.02

Weight (kDa)

5.6

Isoelectric Point (pI)

62.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	131, 207, 240, 346, 377, 413
AclWI	GGATC	2 cut(s)	44, 230
AcoI	YGGCCR	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	2 cut(s)	176, 254
AgsI	TTSAA	1 cut(s)	286
AjiI	CACGTC	1 cut(s)	68
AluBI	AGCT	2 cut(s)	274, 289
AluI	AGCT	2 cut(s)	274, 289
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	2 cut(s)	44, 230
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	3 cut(s)	111, 309, 383
ApeKI	GCWGC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	3 cut(s)	170, 339, 388
AsuC2I	CCSGG	2 cut(s)	10, 343
AsuHPI	GGTGA	3 cut(s)	115, 120, 139
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	3 cut(s)	170, 339, 388
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	364
BcnI	CCSGG	2 cut(s)	10, 343
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	369
BisI	GCNGC	2 cut(s)	97, 207
BlsI	GCNGC	2 cut(s)	98, 208
Bme1390I	CCNGG	2 cut(s)	10, 343
Bme18I	GGWCC	3 cut(s)	170, 339, 388
BmeT110I	CYCGRG	1 cut(s)	275
BmgBI	CACGTC	1 cut(s)	68
BmgT120I	GGNCC	3 cut(s)	170, 339, 388
BmiI	GGNNCC	2 cut(s)	341, 390
BmrFI	CCNGG	2 cut(s)	10, 343
BmsI	GCATC	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	368
BpuMI	CCSGG	2 cut(s)	10, 343
BsaJI	CCNNGG	3 cut(s)	104, 181, 380
Bse118I	RCCGGY	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	361
BseDI	CCNNGG	3 cut(s)	104, 181, 380
BseGI	GGATG	2 cut(s)	232, 316
BseMI	GCAATG	1 cut(s)	361
BseRI	GAGGAG	6 cut(s)	45, 48, 51, 72, 75, 320
BseXI	GCAGC	1 cut(s)	83
BshFI	GGCC	3 cut(s)	113, 311, 385
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	5 cut(s)	10, 243, 343, 386, 401
BslFI	GGGAC	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	113, 311, 385
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	49, 235
BspACI	CCGC	6 cut(s)	131, 207, 240, 346, 377, 413
BspANI	GGCC	3 cut(s)	113, 311, 385
BspLI	GGNNCC	2 cut(s)	341, 390
BspPI	GGATC	2 cut(s)	44, 230
BsrDI	GCAATG	1 cut(s)	361
BsrFI	RCCGGY	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	3 cut(s)	104, 181, 380
BssMI	GATC	2 cut(s)	49, 235
BssT1I	CCWWGG	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	111, 244
BstDEI	CTNAG	1 cut(s)	326
BstDSI	CCRYGG	2 cut(s)	181, 380
BstF5I	GGATG	2 cut(s)	232, 316
BstKTI	GATC	2 cut(s)	52, 238
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	49, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	8, 341
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	368
BsuRI	GGCC	3 cut(s)	113, 311, 385
BtgI	CCRYGG	2 cut(s)	181, 380
BtrI	CACGTC	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	232, 316
Cac8I	GCNNGC	2 cut(s)	111, 244
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	3 cut(s)	170, 339, 388
CseI	GACGC	1 cut(s)	414
Csp6I	GTAC	2 cut(s)	175, 253
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	9 cut(s)	109, 113, 206, 218, 274, 289, 311, 385, 400
CviKI_1	RGCY	9 cut(s)	109, 113, 206, 218, 274, 289, 311, 385, 400
CviQI	GTAC	2 cut(s)	175, 253
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	2 cut(s)	51, 237
DpnII	GATC	2 cut(s)	49, 235
EaeI	YGGCCR	1 cut(s)	383
EciI	GGCGGA	2 cut(s)	366, 428
Eco130I	CCWWGG	1 cut(s)	104
Eco47I	GGWCC	3 cut(s)	170, 339, 388
Eco88I	CYCGRG	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	1 cut(s)	259
FaiI	YATR	2 cut(s)	257, 444
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	1 cut(s)	255
FauI	CCCGC	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	97, 207
FokI	GGATG	2 cut(s)	239, 303
Fsp4HI	GCNGC	2 cut(s)	97, 207
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	2 cut(s)	97, 207
HaeIII	GGCC	3 cut(s)	113, 311, 385
HapII	CCGG	5 cut(s)	10, 243, 343, 386, 401
HgaI	GACGC	1 cut(s)	414
Hin1II	CATG	1 cut(s)	259
HinfI	GANTC	2 cut(s)	136, 373
HpaII	CCGG	5 cut(s)	10, 243, 343, 386, 401
HphI	GGTGA	3 cut(s)	115, 120, 139
Hpy188III	TCNNGA	1 cut(s)	16
Hpy99I	CGWCG	2 cut(s)	161, 430
HpyAV	CCTTC	2 cut(s)	155, 161
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	4, 259, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	259
KroI	GCCGGC	1 cut(s)	242
KroNI	GCCGGC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	49, 235
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	7 cut(s)	23, 95, 256, 322, 356, 399, 414
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	67
MalI	GATC	2 cut(s)	51, 237
MboI	GATC	2 cut(s)	49, 235
MboII	GAAGA	4 cut(s)	209, 212, 280, 373
MfeI	CAATTG	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	3 cut(s)	91, 152, 281
MlyI	GAGTC	2 cut(s)	145, 367
MmeI	TCCRAC	1 cut(s)	417
MreI	CGCCGGCG	1 cut(s)	242
MroNI	GCCGGC	1 cut(s)	242
MseI	TTAA	1 cut(s)	264
MspI	CCGG	5 cut(s)	10, 243, 343, 386, 401
MspR9I	CCNGG	2 cut(s)	10, 343
MunI	CAATTG	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	215
NaeI	GCCGGC	1 cut(s)	244
NciI	CCSGG	2 cut(s)	10, 343
NdeII	GATC	2 cut(s)	49, 235
NgoMIV	GCCGGC	1 cut(s)	242
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	2 cut(s)	341, 390
NmeAIII	GCCGAG	1 cut(s)	159
NspI	RCATGY	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	98, 208
PleI	GAGTC	2 cut(s)	144, 367
PpsI	GAGTC	2 cut(s)	144, 367
PspN4I	GGNNCC	2 cut(s)	341, 390
PspPI	GGNCC	3 cut(s)	170, 339, 388
RsaI	GTAC	2 cut(s)	176, 254
RsaNI	GTAC	2 cut(s)	175, 253
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	97, 207
Sau3AI	GATC	2 cut(s)	49, 235
Sau96I	GGNCC	3 cut(s)	170, 339, 388
SchI	GAGTC	2 cut(s)	145, 367
ScrFI	CCNGG	2 cut(s)	10, 343
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	8 cut(s)	70, 82, 106, 128, 172, 190, 276, 291
SfaNI	GCATC	1 cut(s)	325
SgrAI	CRCCGGYG	1 cut(s)	242
SinI	GGWCC	3 cut(s)	170, 339, 388
Sse9I	AATT	3 cut(s)	91, 152, 281
SsiI	CCGC	6 cut(s)	131, 207, 240, 346, 377, 413
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	2 cut(s)	8, 341
StyI	CCWWGG	1 cut(s)	104
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	2 cut(s)	17, 159
TasI	AATT	3 cut(s)	91, 152, 281
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TseI	GCWGC	1 cut(s)	96
TspGWI	ACGGA	2 cut(s)	106, 162
VpaK11BI	GGWCC	3 cut(s)	170, 339, 388
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.