Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002389.1

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Forward (+)

84118 .. 84538

Gene Structure 421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002389.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgaagaagaagccgctgcagaagccaaaatggatggagtcgatccccgccggtgagaagtacatgcagattaagaagaagcttagggaattgaagctccacacagtctgcgaggaggccaagtgtcccaatctcggcgagtgctggtccgacggaggtttacggcggcgaaaccgccactgccaccaccactatcatgattcttggcaacaagtgtacgcgcggttgcaggtgaggttttgtaatgtgaagacttctaggactccgccgatgctggaccccaatgagccggcgaatgtggaggaggcgattgcgtcgtgggggttggattatgtggtgaatacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

115

Amino Acids

13.54

Weight (kDa)

9.3

Isoelectric Point (pI)

63.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	220
Acc36I	ACCTGC	1 cut(s)	220
AccII	CGCG	2 cut(s)	221, 223
AciI	CCGC	6 cut(s)	14, 48, 166, 175, 223, 266
AclWI	GGATC	1 cut(s)	37
AfaI	GTAC	2 cut(s)	62, 218
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	2 cut(s)	82, 97
AluI	AGCT	2 cut(s)	82, 97
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	147, 277
AsuHPI	GGTGA	2 cut(s)	65, 244
AvaII	GGWCC	2 cut(s)	147, 277
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	17
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	3 cut(s)	14, 17, 167
BlsI	GCNGC	3 cut(s)	15, 18, 168
Bme18I	GGWCC	2 cut(s)	147, 277
BmgT120I	GGNCC	2 cut(s)	147, 277
BmiI	GGNNCC	1 cut(s)	279
BmsI	GCATC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse118I	RCCGGY	2 cut(s)	50, 289
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	128, 317
BseXI	GCAGC	1 cut(s)	3
Bsh1236I	CGCG	2 cut(s)	221, 223
BshFI	GGCC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	51, 290
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	6 cut(s)	14, 48, 166, 175, 223, 266
BspANI	GGCC	1 cut(s)	119
BspFNI	CGCG	2 cut(s)	221, 223
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	37
BsrFI	RCCGGY	2 cut(s)	50, 289
BssAI	RCCGGY	2 cut(s)	50, 289
BssMI	GATC	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	2 cut(s)	221, 223
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	17
BstUI	CGCG	2 cut(s)	221, 223
BstV1I	GCAGC	1 cut(s)	3
BstV2I	GAAGAC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	2 cut(s)	50, 289
Cfr13I	GGNCC	2 cut(s)	147, 277
CseI	GACGC	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	61, 217
CviAII	CATG	2 cut(s)	64, 197
CviJI	RGCY	6 cut(s)	13, 25, 82, 97, 119, 289
CviKI_1	RGCY	6 cut(s)	13, 25, 82, 97, 119, 289
CviQI	GTAC	2 cut(s)	61, 217
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	147, 277
FaeI	CATG	2 cut(s)	67, 200
FaiI	YATR	3 cut(s)	65, 198, 333
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	2 cut(s)	63, 196
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	14, 17, 167
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	14, 17, 167
FspBI	CTAG	1 cut(s)	258
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	3 cut(s)	14, 17, 167
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	51, 290
HgaI	GACGC	1 cut(s)	303
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	2 cut(s)	67, 200
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	38, 200, 262
HpaII	CCGG	2 cut(s)	51, 290
HphI	GGTGA	2 cut(s)	65, 244
Hpy166II	GTNNAC	2 cut(s)	161, 217
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	2 cut(s)	161, 217
Hpy99I	CGWCG	2 cut(s)	155, 319
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	19, 67, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	67, 200
HspAI	GCGC	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	289
KroNI	GCCGGC	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	5 cut(s)	64, 130, 215, 260, 303
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	258
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	4 cut(s)	16, 19, 88, 262
MluCI	AATT	1 cut(s)	89
MlyI	GAGTC	2 cut(s)	47, 256
MmeI	TCCRAC	2 cut(s)	174, 306
MnlI	CCTC	6 cut(s)	106, 109, 149, 228, 295, 298
MroNI	GCCGGC	1 cut(s)	289
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	2 cut(s)	51, 290
MvnI	CGCG	2 cut(s)	221, 223
MwoI	GCNNNNNNNGC	1 cut(s)	22
NaeI	GCCGGC	1 cut(s)	291
NdeII	GATC	1 cut(s)	42
NgoMIV	GCCGGC	1 cut(s)	289
NlaIII	CATG	2 cut(s)	67, 200
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	114
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	196
PaqCI	CACCTGC	1 cut(s)	220
PdiI	GCCGGC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	15, 18, 168
PleI	GAGTC	2 cut(s)	46, 256
PpsI	GAGTC	2 cut(s)	46, 256
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	147, 277
PstI	CTGCAG	1 cut(s)	21
RsaI	GTAC	2 cut(s)	62, 218
RsaNI	GTAC	2 cut(s)	61, 217
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	14, 17, 167
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	2 cut(s)	147, 277
SchI	GAGTC	2 cut(s)	47, 256
SetI	ASST	5 cut(s)	84, 99, 160, 234, 239
SfaNI	GCATC	1 cut(s)	261
SfcI	CTRYAG	1 cut(s)	17
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	2 cut(s)	147, 277
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	89
SsiI	CCGC	6 cut(s)	14, 48, 166, 175, 223, 266
SspMI	CTAG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	41
TasI	AATT	1 cut(s)	89
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	2 cut(s)	16, 169
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	185
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	147, 277
XceI	RCATGY	1 cut(s)	67
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.