Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000381.1

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Forward (+)

63290 .. 63902

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000381.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgcagactcggttctcagccctgacccgaaccctaaactccatgacccgatccttctcctcttccacgccgtcaaccacctcctcctcccaattgcctcctccgtgctcaactcgccgccgatctcccactcacggaattcgtcgaaggcgaaggtctgtactccgtggaggtcgagacacgaagaagaagccgctgcagaagccaaaatggatggagtcgatcccggccggcgagaagtacatgcagattaagaagaagctcagggaattgaagctccacacagtctgcgaggaggccaagtgtcccaatctcggtgagtgctggtccgacggaggtttaaggcggcgaaaccgccactaccaccaccactatcatgattcttggcaacaagtgtacgcgcggttgcagacttctaggactccgccgctgctggaccccaatgagccgacgaatgtggaggaggcgattgcgtcgtgggggttggattgtggtgaatacttgagtggaccgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

172

Amino Acids

19.87

Weight (kDa)

10.32

Isoelectric Point (pI)

84.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	401, 403
AciI	CCGC	7 cut(s)	118, 194, 346, 355, 403, 425, 428
AclWI	GGATC	2 cut(s)	45, 217
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	3 cut(s)	162, 242, 398
AfiI	CCNNNNNNNGG	2 cut(s)	134, 314
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	2 cut(s)	262, 277
AluI	AGCT	2 cut(s)	262, 277
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	45, 217
AoxI	GGCC	2 cut(s)	228, 297
ApeKI	GCWGC	2 cut(s)	196, 430
ApoI	RAATTY	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	3 cut(s)	327, 436, 509
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	329, 506
AvaII	GGWCC	3 cut(s)	327, 436, 509
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	183, 417
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	417
BfmI	CTRYAG	1 cut(s)	197
BisI	GCNGC	6 cut(s)	118, 194, 197, 347, 428, 431
BlsI	GCNGC	6 cut(s)	119, 195, 198, 348, 429, 432
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	3 cut(s)	327, 436, 509
BmgT120I	GGNCC	3 cut(s)	327, 436, 509
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 314
Bse118I	RCCGGY	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	2 cut(s)	134, 314
BseMII	CTCAG	2 cut(s)	30, 277
BseRI	GAGGAG	6 cut(s)	49, 73, 76, 90, 308, 476
BseX3I	CGGCCG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	183, 417
Bsh1236I	CGCG	2 cut(s)	401, 403
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	230, 299
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	227, 231
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	134, 314
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	2 cut(s)	230, 299
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	3 cut(s)	50, 122, 222
BspACI	CCGC	7 cut(s)	118, 194, 346, 355, 403, 425, 428
BspANI	GGCC	2 cut(s)	230, 299
BspCNI	CTCAG	2 cut(s)	29, 276
BspFNI	CGCG	2 cut(s)	401, 403
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	438
BspMAI	CTGCAG	1 cut(s)	201
BspPI	GGATC	2 cut(s)	45, 217
BsrFI	RCCGGY	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	3 cut(s)	50, 122, 222
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	2 cut(s)	16, 263
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	2 cut(s)	401, 403
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	3 cut(s)	53, 125, 225
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	3 cut(s)	50, 122, 222
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 202
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	197
BstUI	CGCG	2 cut(s)	401, 403
BstV1I	GCAGC	2 cut(s)	183, 417
BstZI	CGGCCG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	230, 299
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	232
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	327, 436, 509
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	3 cut(s)	161, 241, 397
CviAII	CATG	3 cut(s)	43, 244, 377
CviJI	RGCY	8 cut(s)	20, 193, 205, 230, 262, 277, 299, 448
CviKI_1	RGCY	8 cut(s)	20, 193, 205, 230, 262, 277, 299, 448
CviQI	GTAC	3 cut(s)	161, 241, 397
DdeI	CTNAG	2 cut(s)	16, 263
DpnI	GATC	3 cut(s)	52, 124, 224
DpnII	GATC	3 cut(s)	50, 122, 222
EaeI	YGGCCR	1 cut(s)	228
EagI	CGGCCG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
EciI	GGCGGA	1 cut(s)	414
EclXI	CGGCCG	1 cut(s)	228
Eco47I	GGWCC	3 cut(s)	327, 436, 509
Eco52I	CGGCCG	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	138
FaeI	CATG	3 cut(s)	46, 247, 380
FaiI	YATR	3 cut(s)	44, 245, 378
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	3 cut(s)	42, 243, 376
Fnu4HI	GCNGC	6 cut(s)	118, 194, 197, 347, 428, 431
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	6 cut(s)	118, 194, 197, 347, 428, 431
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	6 cut(s)	118, 194, 197, 347, 428, 431
HaeIII	GGCC	2 cut(s)	230, 299
HapII	CCGG	2 cut(s)	227, 231
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	3 cut(s)	46, 247, 380
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	4 cut(s)	7, 218, 380, 421
HpaII	CCGG	2 cut(s)	227, 231
HphI	GGTGA	2 cut(s)	329, 506
Hpy166II	GTNNAC	3 cut(s)	75, 397, 509
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	2 cut(s)	176, 377
Hpy8I	GTNNAC	3 cut(s)	75, 397, 509
Hpy99I	CGWCG	4 cut(s)	147, 335, 454, 478
HpyAV	CCTTC	3 cut(s)	64, 141, 147
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	4 cut(s)	4, 199, 247, 409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 202
HpyF3I	CTNAG	2 cut(s)	16, 263
Hsp92II	CATG	3 cut(s)	46, 247, 380
HspAI	GCGC	1 cut(s)	401
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	50, 122, 222
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	6 cut(s)	35, 240, 244, 250, 310, 419
Lsp1109I	GCAGC	2 cut(s)	183, 417
MaeI	CTAG	1 cut(s)	417
MalI	GATC	3 cut(s)	52, 124, 224
MboI	GATC	3 cut(s)	50, 122, 222
MboII	GAAGA	4 cut(s)	54, 196, 199, 268
MfeI	CAATTG	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	3 cut(s)	92, 138, 269
MlyI	GAGTC	2 cut(s)	227, 415
MmeI	TCCRAC	2 cut(s)	354, 465
MroNI	GCCGGC	1 cut(s)	230
MseI	TTAA	2 cut(s)	252, 341
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	2 cut(s)	196, 430
MspI	CCGG	2 cut(s)	227, 231
MspR9I	CCNGG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	92
MvnI	CGCG	2 cut(s)	401, 403
MwoI	GCNNNNNNNGC	2 cut(s)	114, 202
NaeI	GCCGGC	1 cut(s)	232
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	3 cut(s)	50, 122, 222
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	3 cut(s)	46, 247, 380
NlaIV	GGNNCC	1 cut(s)	438
NspI	RCATGY	1 cut(s)	247
PagI	TCATGA	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	148
PdiI	GCCGGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	6 cut(s)	119, 195, 198, 348, 429, 432
PleI	GAGTC	2 cut(s)	226, 415
PpsI	GAGTC	2 cut(s)	226, 415
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	3 cut(s)	327, 436, 509
PstI	CTGCAG	1 cut(s)	201
RsaI	GTAC	3 cut(s)	162, 242, 398
RsaNI	GTAC	3 cut(s)	161, 241, 397
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	252, 341
SatI	GCNGC	6 cut(s)	118, 194, 197, 347, 428, 431
Sau3AI	GATC	3 cut(s)	50, 122, 222
Sau96I	GGNCC	3 cut(s)	327, 436, 509
SchI	GAGTC	2 cut(s)	227, 415
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	6 cut(s)	83, 158, 175, 264, 279, 340
SfcI	CTRYAG	1 cut(s)	197
SinI	GGWCC	3 cut(s)	327, 436, 509
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	3 cut(s)	92, 138, 269
SsiI	CCGC	7 cut(s)	118, 194, 346, 355, 403, 425, 428
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	3 cut(s)	145, 175, 221
TasI	AATT	3 cut(s)	92, 138, 269
TatI	WGTACW	2 cut(s)	160, 240
TauI	GCSGC	4 cut(s)	120, 196, 349, 430
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	252, 341
Tru9I	TTAA	2 cut(s)	252, 341
TseI	GCWGC	2 cut(s)	196, 430
TspGWI	ACGGA	4 cut(s)	93, 150, 155, 348
VpaK11BI	GGWCC	3 cut(s)	327, 436, 509
XapI	RAATTY	1 cut(s)	138
XceI	RCATGY	1 cut(s)	247
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.