Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Reverse (-)

23886252 .. 23886592

Gene Structure 341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG110500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCAGATTAAGAAAAAGCTCAGGGAATCGAAGCTCCACACAGTCTGCGAGGAGGCCAAGTATCCCATTCTCAGCGAGTGCTGGTCCAGCGGTGAAACCGCCACCGCCACTATCATGATTCTGGGCAACATATGTACGCTCAATTGCAGGTTTTGTAATGTGAAGACTTCTAGGACTCCGCCGTGGCTGGACCCCAATGAGCCAGCGAATGTGGCGGAGGCGATTGCGTCGTGGGGGTTGGATTATGTGGCGATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

86

Amino Acids

9.57

Weight (kDa)

6.54

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Radical_SAM	PF04055	39 - 86	1.7e-07	Radical SAM superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	138
AciI	CCGC	5 cut(s)	90, 99, 105, 179, 215
AfaI	GTAC	1 cut(s)	136
AluBI	AGCT	2 cut(s)	19, 34
AluI	AGCT	2 cut(s)	19, 34
AoxI	GGCC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	84, 190
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	2 cut(s)	84, 190
BbsI	GAAGAC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	166
BciVI	GTATCC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	72
Bme18I	GGWCC	2 cut(s)	84, 190
BmgT120I	GGNCC	2 cut(s)	84, 190
BmiI	GGNNCC	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	170
Bpu10I	CCTNAGC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
BseDI	CCNNGG	1 cut(s)	182
BseMII	CTCAG	2 cut(s)	34, 85
BseRI	GAGGAG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	56
BspACI	CCGC	5 cut(s)	90, 99, 105, 179, 215
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	33, 84
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	20, 71
BstDSI	CCRYGG	1 cut(s)	182
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 212
BstV2I	GAAGAC	1 cut(s)	170
BsuI	GTATCC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	182
BveI	ACCTGC	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	204
CciI	TCATGA	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	84, 190
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	5 cut(s)	19, 34, 56, 187, 202
CviKI_1	RGCY	5 cut(s)	19, 34, 56, 187, 202
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	2 cut(s)	20, 71
EciI	GGCGGA	2 cut(s)	168, 230
Eco47I	GGWCC	2 cut(s)	84, 190
FaeI	CATG	1 cut(s)	118
FaiI	YATR	4 cut(s)	116, 131, 133, 246
FatI	CATG	1 cut(s)	114
FauNDI	CATATG	1 cut(s)	131
FspBI	CTAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	56
HgaI	GACGC	1 cut(s)	216
Hin1II	CATG	1 cut(s)	118
HinfI	GANTC	3 cut(s)	26, 118, 175
HphI	GGTGA	1 cut(s)	104
Hpy188III	TCNNGA	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	4, 147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 212
HpyF3I	CTNAG	2 cut(s)	20, 71
Hsp92II	CATG	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	7 cut(s)	7, 67, 100, 107, 133, 173, 216
MaeI	CTAG	1 cut(s)	171
MboII	GAAGA	1 cut(s)	175
MfeI	CAATTG	1 cut(s)	142
MluCI	AATT	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	3 cut(s)	43, 46, 211
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	90
MunI	CAATTG	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	87, 212
NdeI	CATATG	1 cut(s)	131
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	192
PagI	TCATGA	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	26, 118
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	84, 190
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	9
Sau96I	GGNCC	2 cut(s)	84, 190
SchI	GAGTC	1 cut(s)	169
SetI	ASST	3 cut(s)	21, 36, 152
SinI	GGWCC	2 cut(s)	84, 190
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	5 cut(s)	90, 99, 105, 179, 215
SspMI	CTAG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	29
TasI	AATT	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	26, 118
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
VpaK11BI	GGWCC	2 cut(s)	84, 190
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.