Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000776.1

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Reverse (-)

196510 .. 200273

Gene Structure 3764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000776.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggacaatctgagatcgggaagacgtcggcgtcaaggattcgaagctaacgccggtgttccgcctccggtagatggcctgactgtgagaatacgaccgggtctcgccctcagccctcgggtaagggtcgcaataccgggcgaaggtccatactccgtggaggtcggcacgaagaataagccgctgccgaagccaaaatggatggagtcgatctcggcaggcgagaagtacatgcagattaagaagaagctcagggaattgaagctccacacagtctccgaggaggccaagtgtcccaatctcggtgagttttgtaatgcgaagacttcgaggactcctccgctgctggacctcaatgagctggcgaatgtggaggaggcgattgtgtcgtgggggttggattatgtggtgattacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

139

Amino Acids

15.39

Weight (kDa)

9.51

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	30
AatII	GACGTC	1 cut(s)	28
AciI	CCGC	3 cut(s)	62, 182, 341
AcyI	GRCGYC	2 cut(s)	25, 31
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	3 cut(s)	74, 143, 302
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	4 cut(s)	47, 250, 265, 361
AluI	AGCT	4 cut(s)	47, 250, 265, 361
Alw26I	GTCTC	2 cut(s)	107, 280
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	2 cut(s)	76, 285
ApeKI	GCWGC	2 cut(s)	184, 343
AspS9I	GGNCC	2 cut(s)	146, 349
AsuC2I	CCSGG	2 cut(s)	99, 138
AsuHPI	GGTGA	1 cut(s)	317
AsuII	TTCGAA	1 cut(s)	42
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	2 cut(s)	146, 349
BbsI	GAAGAC	2 cut(s)	28, 329
BbvCI	CCTCAGC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	171, 330
BccI	CCATC	2 cut(s)	68, 196
BcnI	CCSGG	2 cut(s)	99, 138
BcoDI	GTCTC	2 cut(s)	107, 280
BisI	GCNGC	3 cut(s)	182, 185, 344
BlsI	GCNGC	3 cut(s)	183, 186, 345
Bme1390I	CCNGG	2 cut(s)	99, 138
Bme18I	GGWCC	2 cut(s)	146, 349
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	146, 349
BmrFI	CCNGG	2 cut(s)	99, 138
BpiI	GAAGAC	2 cut(s)	28, 329
BplI	GAGNNNNNCTC	4 cut(s)	197, 229, 322, 354
Bpu10I	CCTNAGC	2 cut(s)	110, 251
Bpu14I	TTCGAA	1 cut(s)	42
BpuMI	CCSGG	2 cut(s)	99, 138
BsaHI	GRCGYC	2 cut(s)	25, 31
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	116, 156, 279
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	4 cut(s)	260, 275, 290, 305
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 143, 302
Bse118I	RCCGGY	1 cut(s)	53
BseDI	CCNNGG	3 cut(s)	116, 156, 279
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	3 cut(s)	74, 143, 302
BseMII	CTCAG	2 cut(s)	124, 265
BseRI	GAGGAG	3 cut(s)	296, 327, 389
BseXI	GCAGC	2 cut(s)	171, 330
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	78, 287
BsiEI	CGRYCG	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	4 cut(s)	54, 68, 98, 137
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	3 cut(s)	74, 143, 302
BsmAI	GTCTC	2 cut(s)	107, 280
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	78, 287
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	117
Bsp119I	TTCGAA	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	14, 210
BspACI	CCGC	3 cut(s)	62, 182, 341
BspANI	GGCC	2 cut(s)	78, 287
BspCNI	CTCAG	2 cut(s)	123, 264
BspT104I	TTCGAA	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	3 cut(s)	116, 156, 279
BssMI	GATC	2 cut(s)	14, 210
BssNI	GRCGYC	2 cut(s)	25, 31
Bst4CI	ACNGT	2 cut(s)	85, 274
BstACI	GRCGYC	2 cut(s)	25, 31
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	220, 363
BstDEI	CTNAG	3 cut(s)	11, 110, 251
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	17, 213
BstMAI	GTCTC	2 cut(s)	107, 280
BstMBI	GATC	2 cut(s)	14, 210
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	97, 136
BstV1I	GCAGC	2 cut(s)	171, 330
BstV2I	GAAGAC	2 cut(s)	28, 329
BsuRI	GGCC	2 cut(s)	78, 287
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	220, 363
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	146, 349
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	9 cut(s)	47, 78, 114, 181, 193, 250, 265, 287, 361
CviKI_1	RGCY	9 cut(s)	47, 78, 114, 181, 193, 250, 265, 287, 361
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	3 cut(s)	11, 110, 251
DpnI	GATC	2 cut(s)	16, 212
DpnII	GATC	2 cut(s)	14, 210
DrdI	GACNNNNNNGTC	1 cut(s)	30
DseDI	GACNNNNNNGTC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	146, 349
Eco88I	CYCGRG	1 cut(s)	117
FaeI	CATG	1 cut(s)	235
FaiI	YATR	3 cut(s)	151, 233, 405
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	182, 185, 344
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	3 cut(s)	182, 185, 344
GluI	GCNGC	3 cut(s)	182, 185, 344
HaeIII	GGCC	2 cut(s)	78, 287
HapII	CCGG	4 cut(s)	54, 68, 98, 137
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	2 cut(s)	25, 31
Hin1II	CATG	1 cut(s)	235
HinfI	GANTC	3 cut(s)	39, 206, 334
HpaII	CCGG	4 cut(s)	54, 68, 98, 137
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	2 cut(s)	12, 280
Hpy188III	TCNNGA	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	2 cut(s)	85, 274
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	3 cut(s)	11, 110, 251
HpySE526I	ACGT	1 cut(s)	25
Hsp92I	GRCGYC	2 cut(s)	25, 31
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	14, 210
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	9 cut(s)	67, 81, 92, 111, 150, 204, 238, 332, 347
Lsp1109I	GCAGC	2 cut(s)	171, 330
MaeII	ACGT	1 cut(s)	25
MalI	GATC	2 cut(s)	16, 212
MboI	GATC	2 cut(s)	14, 210
MboII	GAAGA	4 cut(s)	33, 184, 256, 334
MluCI	AATT	1 cut(s)	257
MlyI	GAGTC	2 cut(s)	215, 328
MmeI	TCCRAC	1 cut(s)	378
MseI	TTAA	1 cut(s)	240
MspA1I	CMGCKG	2 cut(s)	184, 343
MspI	CCGG	4 cut(s)	54, 68, 98, 137
MspR9I	CCNGG	2 cut(s)	99, 138
MwoI	GCNNNNNNNGC	1 cut(s)	190
NciI	CCSGG	2 cut(s)	99, 138
NdeII	GATC	2 cut(s)	14, 210
NlaIII	CATG	1 cut(s)	235
NmeAIII	GCCGAG	1 cut(s)	194
NspI	RCATGY	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	39
PflFI	GACNNNGTC	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	183, 186, 345
PleI	GAGTC	2 cut(s)	214, 328
PpsI	GAGTC	2 cut(s)	214, 328
PspPI	GGNCC	2 cut(s)	146, 349
PsyI	GACNNNGTC	1 cut(s)	99
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	3 cut(s)	182, 185, 344
Sau3AI	GATC	2 cut(s)	14, 210
Sau96I	GGNCC	2 cut(s)	146, 349
SchI	GAGTC	2 cut(s)	215, 328
ScrFI	CCNGG	2 cut(s)	99, 138
SetI	ASST	8 cut(s)	28, 49, 148, 165, 252, 267, 354, 363
SfuI	TTCGAA	1 cut(s)	42
SgrAI	CRCCGGYG	1 cut(s)	53
SinI	GGWCC	2 cut(s)	146, 349
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	3 cut(s)	62, 182, 341
StyD4I	CCNGG	2 cut(s)	97, 136
TaaI	ACNGT	2 cut(s)	85, 274
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	3 cut(s)	42, 209, 329
TasI	AATT	1 cut(s)	257
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	2 cut(s)	184, 343
TspGWI	ACGGA	1 cut(s)	145
Tth111I	GACNNNGTC	1 cut(s)	99
VpaK11BI	GGWCC	2 cut(s)	146, 349
XceI	RCATGY	1 cut(s)	235
ZraI	GACGTC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.