Rh5AG232800

Peptidyl-prolyl cis-trans isomerase CYP37

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0014850
Physical Location & Seq
Forward (+)
28121992 .. 28126169
4178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG232800.1

Sequence Viewer

Length: 567 bp
ATGGAGTCGATCCCGGCCGGCGATAAGTACATGCAGATTAAGAAGAAGCTTAGGGAATTGAAGCTCCACACAGTCTGCGAGGAGGCCAAGTGTCCCAATCTAGGCGAGTGCTGGTCCGGCGGAGGTTTATGGCGGCGAAACCGCCAATGCCACCACCACTATCATGATTCTTGGCAACAAGTGTACGCGCGGTTGCAGACTTCTAGGACTCCGCCGCTGCTGGACCCCAATGAGCCGGCGAATGTGGAGGAGGCGATTGCATCGTGGGGGTTGGATTATGTGGACGGGGAATTGCCAGTTCTTCCGCTATCTGTTTATGGATCAGTTGCTATGACACATAATAAAGCCTCTGACGAGTACTCCTCACCATATCAGTTTTTCTTCTATCTTTATGATAAAAGAAATGCTGGCTTGGGAGGATTATCATTTGATGAAGGAGAATTCTCAGTTTTTGGATACACAACAGTTGGGAAAGATATTGTTTCACAGATAAAAACTGGAGATGTGATTCGATCTGCAAAGCTGGGCGAAGGTCAAGATCGTGTAGTGTTGCCAAATGAGAAGTGA

Protein Analysis

188

Amino Acids

21.22

Weight (kDa)

5.87

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIAS_N PF16881 3 - 31 6.7e-10 N-terminal domain of lipoyl synthase of Radical_SAM family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 188, 190
AciI CCGC 7 cut(s) 120, 133, 142, 190, 212, 215, 305
AclWI GGATC 2 cut(s) 4, 328
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 1 cut(s) 440
AfaI GTAC 3 cut(s) 29, 185, 359
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 3 cut(s) 49, 64, 523
AluI AGCT 3 cut(s) 49, 64, 523
AlwI GGATC 2 cut(s) 4, 328
AoxI GGCC 2 cut(s) 15, 84
ApeKI GCWGC 1 cut(s) 217
ApoI RAATTY 1 cut(s) 440
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 2 cut(s) 114, 223
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 357
AvaII GGWCC 2 cut(s) 114, 223
BbvI GCAGC 1 cut(s) 204
BciVI GTATCC 1 cut(s) 449
BcnI CCSGG 1 cut(s) 14
BfaI CTAG 2 cut(s) 101, 204
BfuI GTATCC 1 cut(s) 449
BisI GCNGC 3 cut(s) 134, 215, 218
BlsI GCNGC 3 cut(s) 135, 216, 219
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 2 cut(s) 114, 223
BmgT120I GGNCC 2 cut(s) 114, 223
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 269
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 14
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 344, 374
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse118I RCCGGY 2 cut(s) 17, 235
Bse1I ACTGG 2 cut(s) 296, 502
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 2 cut(s) 296, 502
BseRI GAGGAG 3 cut(s) 95, 263, 352
BseX3I CGGCCG 1 cut(s) 15
BseXI GCAGC 1 cut(s) 204
BseYI CCCAGC 1 cut(s) 523
Bsh1236I CGCG 2 cut(s) 188, 190
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 2 cut(s) 17, 86
BsiEI CGRYCG 1 cut(s) 18
BsiSI CCGG 4 cut(s) 14, 18, 117, 236
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 2 cut(s) 17, 86
Bsp143I GATC 4 cut(s) 9, 320, 512, 538
BspACI CCGC 7 cut(s) 120, 133, 142, 190, 212, 215, 305
BspANI GGCC 2 cut(s) 17, 86
BspCNI CTCAG 1 cut(s) 458
BspFNI CGCG 2 cut(s) 188, 190
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 2 cut(s) 4, 328
BsrFI RCCGGY 2 cut(s) 17, 235
BsrI ACTGG 2 cut(s) 296, 502
BssAI RCCGGY 2 cut(s) 17, 235
BssMI GATC 4 cut(s) 9, 320, 512, 538
Bst4CI ACNGT 2 cut(s) 73, 466
BstC8I GCNNGC 3 cut(s) 19, 237, 409
BstDEI CTNAG 2 cut(s) 50, 445
BstFNI CGCG 2 cut(s) 188, 190
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 4 cut(s) 12, 323, 515, 541
BstMBI GATC 4 cut(s) 9, 320, 512, 538
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 2 cut(s) 188, 190
BstV1I GCAGC 1 cut(s) 204
BstZI CGGCCG 1 cut(s) 15
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 2 cut(s) 17, 86
Cac8I GCNNGC 3 cut(s) 19, 237, 409
CciI TCATGA 1 cut(s) 163
CfoI GCGC 1 cut(s) 190
Cfr10I RCCGGY 2 cut(s) 17, 235
Cfr13I GGNCC 2 cut(s) 114, 223
Csp6I GTAC 3 cut(s) 28, 184, 358
CviAII CATG 2 cut(s) 31, 164
CviJI RGCY 8 cut(s) 17, 49, 64, 86, 235, 347, 411, 523
CviKI_1 RGCY 8 cut(s) 17, 49, 64, 86, 235, 347, 411, 523
CviQI GTAC 3 cut(s) 28, 184, 358
DdeI CTNAG 2 cut(s) 50, 445
DpnI GATC 4 cut(s) 11, 322, 514, 540
DpnII GATC 4 cut(s) 9, 320, 512, 538
EaeI YGGCCR 1 cut(s) 15
EagI CGGCCG 1 cut(s) 15
EciI GGCGGA 2 cut(s) 135, 201
EclXI CGGCCG 1 cut(s) 15
Eco47I GGWCC 2 cut(s) 114, 223
Eco52I CGGCCG 1 cut(s) 15
EcoRI GAATTC 1 cut(s) 440
FaeI CATG 2 cut(s) 34, 167
FaiI YATR 9 cut(s) 32, 130, 165, 279, 318, 332, 339, 370, 393
FaqI GGGAC 1 cut(s) 78
FatI CATG 2 cut(s) 30, 163
Fnu4HI GCNGC 3 cut(s) 134, 215, 218
Fsp4HI GCNGC 3 cut(s) 134, 215, 218
FspBI CTAG 2 cut(s) 101, 204
GlaI GCGC 1 cut(s) 189
GluI GCNGC 3 cut(s) 134, 215, 218
GsaI CCCAGC 1 cut(s) 527
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 2 cut(s) 17, 86
HapII CCGG 4 cut(s) 14, 18, 117, 236
HhaI GCGC 1 cut(s) 190
Hin1II CATG 2 cut(s) 34, 167
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 4 cut(s) 5, 167, 208, 508
HpaII CCGG 4 cut(s) 14, 18, 117, 236
HphI GGTGA 1 cut(s) 357
Hpy166II GTNNAC 2 cut(s) 184, 283
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 2 cut(s) 164, 536
Hpy8I GTNNAC 2 cut(s) 184, 283
HpyAV CCTTC 2 cut(s) 428, 524
HpyCH4III ACNGT 2 cut(s) 73, 466
HpyCH4V TGCA 4 cut(s) 34, 196, 260, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 2 cut(s) 50, 445
Hsp92II CATG 2 cut(s) 34, 167
HspAI GCGC 1 cut(s) 188
KroI GCCGGC 2 cut(s) 17, 235
KroNI GCCGGC 2 cut(s) 19, 237
Kzo9I GATC 4 cut(s) 9, 320, 512, 538
LmnI GCTCC 1 cut(s) 69
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 1 cut(s) 269
MaeI CTAG 2 cut(s) 101, 204
MalI GATC 4 cut(s) 11, 322, 514, 540
MboI GATC 4 cut(s) 9, 320, 512, 538
MboII GAAGA 3 cut(s) 55, 293, 373
MluCI AATT 3 cut(s) 56, 290, 440
MlyI GAGTC 2 cut(s) 14, 202
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 8 cut(s) 73, 76, 116, 241, 244, 358, 373, 410
MroNI GCCGGC 2 cut(s) 17, 235
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 217
MspI CCGG 4 cut(s) 14, 18, 117, 236
MspR9I CCNGG 1 cut(s) 14
MvnI CGCG 2 cut(s) 188, 190
MwoI GCNNNNNNNGC 1 cut(s) 117
NaeI GCCGGC 2 cut(s) 19, 237
NciI CCSGG 1 cut(s) 14
NdeII GATC 4 cut(s) 9, 320, 512, 538
NgoMIV GCCGGC 2 cut(s) 17, 235
NlaIII CATG 2 cut(s) 34, 167
NlaIV GGNNCC 1 cut(s) 225
NspI RCATGY 1 cut(s) 34
PagI TCATGA 1 cut(s) 163
PdiI GCCGGC 2 cut(s) 19, 237
PfeI GAWTC 2 cut(s) 167, 508
PkrI GCNGC 3 cut(s) 135, 216, 219
PleI GAGTC 2 cut(s) 13, 202
PpsI GAGTC 2 cut(s) 13, 202
PspFI CCCAGC 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 2 cut(s) 114, 223
RsaI GTAC 3 cut(s) 29, 185, 359
RsaNI GTAC 3 cut(s) 28, 184, 358
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 3 cut(s) 134, 215, 218
Sau3AI GATC 4 cut(s) 9, 320, 512, 538
Sau96I GGNCC 2 cut(s) 114, 223
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 2 cut(s) 14, 202
ScrFI CCNGG 1 cut(s) 14
SetI ASST 5 cut(s) 51, 66, 127, 525, 535
SfaNI GCATC 1 cut(s) 269
SinI GGWCC 2 cut(s) 114, 223
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 3 cut(s) 56, 290, 440
SsiI CCGC 7 cut(s) 120, 133, 142, 190, 212, 215, 305
SspMI CTAG 2 cut(s) 101, 204
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 73, 466
TaqI TCGA 2 cut(s) 8, 511
TasI AATT 3 cut(s) 56, 290, 440
TatI WGTACW 2 cut(s) 27, 357
TauI GCSGC 2 cut(s) 136, 217
TfiI GAWTC 2 cut(s) 167, 508
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseI GCWGC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 447
VpaK11BI GGWCC 2 cut(s) 114, 223
XapI RAATTY 1 cut(s) 440
XceI RCATGY 1 cut(s) 34
XspI CTAG 2 cut(s) 101, 204
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.