Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Reverse (-)

57781469 .. 57781856

Gene Structure 388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG261900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGAGTCGATCTCGGCCGGCGAGAAGTACATGCAGATTAAGAAGAAGCTCAGGGAATTGAAGCTCCACACAGCCTGCGAGGAGGCCAAGTGTCCCAATCTCGGCGAGTGCTGGTCTGGCGGAGGTTTACGGCGGCGAAACCGCCACTGCCACCACCACTATCATGATTCTTGGCAACAAGTGTACGCGTGGTTGCAGACTTCTAGGACTCCGCCGCTGCTGGACCCCAATGAGCCGGCGAATGTGGAGGAGGCGATTGTGTCGTGGGGGTTGGATTGTGTGGTGAATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

97

Amino Acids

11.18

Weight (kDa)

7.0

Isoelectric Point (pI)

74.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIAS_N	PF16881	4 - 31	3.8e-08	N-terminal domain of lipoyl synthase of Radical_SAM family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	188
AciI	CCGC	5 cut(s)	120, 133, 142, 212, 215
AcoI	YGGCCR	1 cut(s)	15
AfaI	GTAC	2 cut(s)	29, 185
AfiI	CCNNNNNNNGG	1 cut(s)	101
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	2 cut(s)	49, 64
AluI	AGCT	2 cut(s)	49, 64
AoxI	GGCC	2 cut(s)	15, 84
ApeKI	GCWGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	204
BisI	GCNGC	3 cut(s)	134, 215, 218
BlsI	GCNGC	3 cut(s)	135, 216, 219
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	225
BplI	GAGNNNNNCTC	1 cut(s)	28
Bpu10I	CCTNAGC	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse118I	RCCGGY	2 cut(s)	17, 235
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	95, 263
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	17, 86
BsiEI	CGRYCG	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	18, 236
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	17, 86
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	5 cut(s)	120, 133, 142, 212, 215
BspANI	GGCC	2 cut(s)	17, 86
BspCNI	CTCAG	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	188
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	225
BsrFI	RCCGGY	2 cut(s)	17, 235
BssAI	RCCGGY	2 cut(s)	17, 235
BssMI	GATC	1 cut(s)	9
BstC8I	GCNNGC	3 cut(s)	19, 76, 237
BstDEI	CTNAG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	34
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	204
BstZI	CGGCCG	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	17, 86
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	3 cut(s)	19, 76, 237
CciI	TCATGA	1 cut(s)	163
Cfr10I	RCCGGY	2 cut(s)	17, 235
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	28, 184
CviAII	CATG	2 cut(s)	31, 164
CviJI	RGCY	6 cut(s)	17, 49, 64, 74, 86, 235
CviKI_1	RGCY	6 cut(s)	17, 49, 64, 74, 86, 235
CviQI	GTAC	2 cut(s)	28, 184
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
EciI	GGCGGA	2 cut(s)	135, 201
EclXI	CGGCCG	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	223
Eco52I	CGGCCG	1 cut(s)	15
FaeI	CATG	2 cut(s)	34, 167
FaiI	YATR	2 cut(s)	32, 165
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	2 cut(s)	30, 163
Fnu4HI	GCNGC	3 cut(s)	134, 215, 218
Fsp4HI	GCNGC	3 cut(s)	134, 215, 218
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	3 cut(s)	134, 215, 218
HaeIII	GGCC	2 cut(s)	17, 86
HapII	CCGG	2 cut(s)	18, 236
Hin1II	CATG	2 cut(s)	34, 167
HinfI	GANTC	3 cut(s)	5, 167, 208
HpaII	CCGG	2 cut(s)	18, 236
Hpy166II	GTNNAC	2 cut(s)	128, 184
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	2 cut(s)	128, 184
HpyCH4V	TGCA	2 cut(s)	34, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	34, 167
KroI	GCCGGC	2 cut(s)	17, 235
KroNI	GCCGGC	2 cut(s)	19, 237
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	7 cut(s)	31, 37, 88, 97, 102, 206, 249
Lsp1109I	GCAGC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	204
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	1 cut(s)	55
MluCI	AATT	1 cut(s)	56
MluI	ACGCGT	1 cut(s)	186
MlyI	GAGTC	2 cut(s)	14, 202
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	73, 76, 116, 241, 244
MroNI	GCCGGC	2 cut(s)	17, 235
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	2 cut(s)	18, 236
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	117
NaeI	GCCGGC	2 cut(s)	19, 237
NdeII	GATC	1 cut(s)	9
NgoMIV	GCCGGC	2 cut(s)	17, 235
NlaIII	CATG	2 cut(s)	34, 167
NlaIV	GGNNCC	1 cut(s)	225
NmeAIII	GCCGAG	1 cut(s)	81
NspI	RCATGY	1 cut(s)	34
PagI	TCATGA	1 cut(s)	163
PdiI	GCCGGC	2 cut(s)	19, 237
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	135, 216, 219
PleI	GAGTC	2 cut(s)	13, 202
PpsI	GAGTC	2 cut(s)	13, 202
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	223
RsaI	GTAC	2 cut(s)	29, 185
RsaNI	GTAC	2 cut(s)	28, 184
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	3 cut(s)	134, 215, 218
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	2 cut(s)	14, 202
SetI	ASST	3 cut(s)	51, 66, 127
SinI	GGWCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	5 cut(s)	120, 133, 142, 212, 215
SspMI	CTAG	1 cut(s)	204
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	56
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	2 cut(s)	136, 217
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	152
TseI	GCWGC	1 cut(s)	217
TspRI	CASTG	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	223
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.