Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011728.1

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Forward (+)

841 .. 3856

Gene Structure 3016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011728.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggagtcgatcccggcaggcgagaagtacatgcagattaagaagaagctcagggaattgaagctccacacagtctgcgaggaggccaagtgtcccaatctcggtgagtgctggtccggtggaggtttacggcggcgaaaccgccactgccaccaccactataatgattctcggcaacaagtgttttgtaatgtgaagacttttaggactcctccgctgctggaccccaatgaaccggcgaatgtggaggaggcgattgcgtcgtgggggttggattatgtggtgcggtcgtcgggggtgtcccttgacctgacttctttcaagcgattgtggatgaggagagcaccaacctcgtcgtgggattctttgtgtctcgtggtgaggacttttgctgagcttcttcaaaatcacaatctactcaatgttgtagatcgagcagagcgagaactaccaggaagtgaggagaacttgctaaagcgtgactttagcttggctgggttgctaggggcgttacccttgcttggctggttctgtaaccgttgtggttgcggcactaccgttggctcccgaggagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

192

Amino Acids

21.71

Weight (kDa)

8.6

Isoelectric Point (pI)

61.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	133, 142, 215, 286, 549
AclWI	GGATC	1 cut(s)	4
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	3 cut(s)	101, 357, 521
AgsI	TTSAA	3 cut(s)	61, 322, 404
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	4 cut(s)	49, 64, 397, 489
AluI	AGCT	4 cut(s)	49, 64, 397, 489
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	2 cut(s)	377, 567
AlwI	GGATC	1 cut(s)	4
Ama87I	CYCGRG	1 cut(s)	567
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	217
AspS9I	GGNCC	2 cut(s)	114, 223
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	2 cut(s)	116, 391
AvaI	CYCGRG	1 cut(s)	567
AvaII	GGWCC	2 cut(s)	114, 223
BauI	CACGAG	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	146
BcgI	CGANNNNNNTGC	2 cut(s)	333, 367
BciT130I	CCWGG	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	377, 567
BfaI	CTAG	2 cut(s)	503, 577
BisI	GCNGC	3 cut(s)	134, 218, 550
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	3 cut(s)	135, 219, 551
Bme1390I	CCNGG	2 cut(s)	14, 453
Bme18I	GGWCC	2 cut(s)	114, 223
BmeT110I	CYCGRG	1 cut(s)	567
BmgT120I	GGNCC	2 cut(s)	114, 223
BmiI	GGNNCC	2 cut(s)	225, 565
BmrFI	CCNGG	2 cut(s)	14, 453
BpiI	GAAGAC	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	50
Bpu1102I	GCTNAGC	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	568
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 357, 521
Bse118I	RCCGGY	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	3 cut(s)	101, 357, 521
BseMII	CTCAG	2 cut(s)	64, 384
BseRI	GAGGAG	5 cut(s)	95, 201, 263, 352, 476
BseXI	GCAGC	1 cut(s)	204
BseYI	CCCAGC	1 cut(s)	494
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	567
BsiSI	CCGG	3 cut(s)	14, 117, 236
BslFI	GGGAC	2 cut(s)	78, 286
BslI	CCNNNNNNNGG	3 cut(s)	101, 357, 521
BsmAI	GTCTC	2 cut(s)	377, 567
BsmFI	GGGAC	2 cut(s)	78, 286
BsnI	GGCC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	9, 430
Bsp1720I	GCTNAGC	1 cut(s)	393
BspACI	CCGC	5 cut(s)	133, 142, 215, 286, 549
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	2 cut(s)	63, 385
BspLI	GGNNCC	2 cut(s)	225, 565
BspPI	GGATC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	2 cut(s)	9, 430
BssSI	CACGAG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	374
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	3 cut(s)	73, 539, 559
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	50, 393
BstF5I	GGATG	1 cut(s)	339
BstKTI	GATC	2 cut(s)	12, 433
BstMAI	GTCTC	2 cut(s)	377, 567
BstMBI	GATC	2 cut(s)	9, 430
BstMCI	CGRYCG	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	12, 451
BstV1I	GCAGC	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	339
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	114, 223
CseI	GACGC	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	8 cut(s)	49, 64, 86, 397, 489, 494, 525, 564
CviKI_1	RGCY	8 cut(s)	49, 64, 86, 397, 489, 494, 525, 564
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	50, 393
DpnI	GATC	2 cut(s)	11, 432
DpnII	GATC	2 cut(s)	9, 430
Eco47I	GGWCC	2 cut(s)	114, 223
Eco88I	CYCGRG	1 cut(s)	567
EcoRII	CCWGG	1 cut(s)	451
FaeI	CATG	1 cut(s)	34
FaiI	YATR	3 cut(s)	32, 162, 279
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FaqI	GGGAC	2 cut(s)	78, 286
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	134, 218, 550
FokI	GGATG	1 cut(s)	346
Fsp4HI	GCNGC	3 cut(s)	134, 218, 550
FspBI	CTAG	2 cut(s)	503, 577
GluI	GCNGC	3 cut(s)	134, 218, 550
GsaI	CCCAGC	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	3 cut(s)	14, 117, 236
HgaI	GACGC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	4 cut(s)	5, 167, 208, 362
HpaII	CCGG	3 cut(s)	14, 117, 236
HphI	GGTGA	2 cut(s)	116, 391
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	567
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	3 cut(s)	265, 295, 358
HpyCH4III	ACNGT	3 cut(s)	73, 539, 559
HpyCH4V	TGCA	1 cut(s)	34
HpyF3I	CTNAG	2 cut(s)	50, 393
Hsp92II	CATG	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	9, 430
LmnI	GCTCC	2 cut(s)	69, 569
Lsp1109I	GCAGC	1 cut(s)	204
MaeI	CTAG	2 cut(s)	503, 577
MaeIII	GTNAC	3 cut(s)	479, 510, 533
MalI	GATC	2 cut(s)	11, 432
MboI	GATC	2 cut(s)	9, 430
MboII	GAAGA	3 cut(s)	55, 208, 392
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	14, 202
MmeI	TCCRAC	1 cut(s)	252
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	3 cut(s)	14, 117, 236
MspR9I	CCNGG	2 cut(s)	14, 453
MvaI	CCWGG	1 cut(s)	453
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	2 cut(s)	9, 430
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	225, 565
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	479
NspI	RCATGY	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	439
PfeI	GAWTC	2 cut(s)	167, 362
PkrI	GCNGC	3 cut(s)	135, 219, 551
PleI	GAGTC	2 cut(s)	13, 202
PpsI	GAGTC	2 cut(s)	13, 202
Psp6I	CCWGG	1 cut(s)	451
PspFI	CCCAGC	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	225, 565
PspPI	GGNCC	2 cut(s)	114, 223
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	3 cut(s)	134, 218, 550
Sau3AI	GATC	2 cut(s)	9, 430
Sau96I	GGNCC	2 cut(s)	114, 223
SchI	GAGTC	2 cut(s)	14, 202
ScrFI	CCNGG	2 cut(s)	14, 453
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	7 cut(s)	51, 66, 127, 312, 353, 399, 491
SinI	GGWCC	2 cut(s)	114, 223
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	5 cut(s)	133, 142, 215, 286, 549
SspMI	CTAG	2 cut(s)	503, 577
StyD4I	CCNGG	2 cut(s)	12, 451
TaaI	ACNGT	3 cut(s)	73, 539, 559
TaqI	TCGA	2 cut(s)	8, 433
TasI	AATT	1 cut(s)	56
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	2 cut(s)	136, 552
TfiI	GAWTC	2 cut(s)	167, 362
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	152
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	152
VpaK11BI	GGWCC	2 cut(s)	114, 223
XceI	RCATGY	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	354
XspI	CTAG	2 cut(s)	503, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.