Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Forward (+)

73559113 .. 73559502

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG525600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAGTCGATCCCGGCAGGCGAGAAGTACATGCAGATTAAGAAGAAGCTAAGGGAATTGAAGCTCCACACAGTCTGCGAGGAGGCCAAGTGTCCCAATCTCGGTGAGTGCTGGTCCGGTGGAGGTTTACGGCGGCGAAACCGCCACTGCCACCACTACTATAATGATTCTCGGCAACAAGTGTACGCGCGGTTGCAGGTGAGGTTTTGTAATGTGAAGACTTCTAGGACTCCTCCGCTGCTGGACCCCAATGAGCCGGCGAATGTGGAGGAGGCGATTGCGTCGTGGGGGTTGGATTATGTGGTGATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

104

Amino Acids

12.04

Weight (kDa)

8.88

Isoelectric Point (pI)

71.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIAS_N	PF16881	3 - 31	1.8e-10	N-terminal domain of lipoyl synthase of Radical_SAM family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	187
AccII	CGCG	2 cut(s)	188, 190
AciI	CCGC	4 cut(s)	133, 142, 190, 236
AclWI	GGATC	1 cut(s)	4
AfaI	GTAC	2 cut(s)	29, 185
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	2 cut(s)	49, 64
AluI	AGCT	2 cut(s)	49, 64
AlwI	GGATC	1 cut(s)	4
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	2 cut(s)	114, 244
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	2 cut(s)	116, 211
AvaII	GGWCC	2 cut(s)	114, 244
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	225
BceAI	ACGGC	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	14
BfaI	CTAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	2 cut(s)	134, 239
BlsI	GCNGC	2 cut(s)	135, 240
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	2 cut(s)	114, 244
BmgT120I	GGNCC	2 cut(s)	114, 244
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseRI	GAGGAG	3 cut(s)	95, 222, 284
BseXI	GCAGC	1 cut(s)	225
Bsh1236I	CGCG	2 cut(s)	188, 190
BshFI	GGCC	1 cut(s)	86
BsiSI	CCGG	3 cut(s)	14, 117, 257
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	4 cut(s)	133, 142, 190, 236
BspANI	GGCC	1 cut(s)	86
BspFNI	CGCG	2 cut(s)	188, 190
BspLI	GGNNCC	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	256
BssMI	GATC	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	19, 258
BstDEI	CTNAG	1 cut(s)	50
BstFNI	CGCG	2 cut(s)	188, 190
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	12
BstUI	CGCG	2 cut(s)	188, 190
BstV1I	GCAGC	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	86
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	145
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	19, 258
CfoI	GCGC	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	114, 244
CseI	GACGC	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	28, 184
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	4 cut(s)	49, 64, 86, 256
CviKI_1	RGCY	4 cut(s)	49, 64, 86, 256
CviQI	GTAC	2 cut(s)	28, 184
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	114, 244
FaeI	CATG	1 cut(s)	34
FaiI	YATR	3 cut(s)	32, 162, 300
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	134, 239
Fsp4HI	GCNGC	2 cut(s)	134, 239
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	2 cut(s)	134, 239
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	3 cut(s)	14, 117, 257
HgaI	GACGC	1 cut(s)	270
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	3 cut(s)	5, 167, 229
HpaII	CCGG	3 cut(s)	14, 117, 257
HphI	GGTGA	2 cut(s)	116, 211
Hpy166II	GTNNAC	2 cut(s)	128, 184
Hpy8I	GTNNAC	2 cut(s)	128, 184
Hpy99I	CGWCG	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	2 cut(s)	34, 196
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	188
KroI	GCCGGC	1 cut(s)	256
KroNI	GCCGGC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	7 cut(s)	3, 27, 97, 130, 182, 227, 270
Lsp1109I	GCAGC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	225
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	2 cut(s)	55, 229
MluCI	AATT	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	14, 223
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	7 cut(s)	73, 76, 116, 195, 243, 262, 265
MroNI	GCCGGC	1 cut(s)	256
MseI	TTAA	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	3 cut(s)	14, 117, 257
MspR9I	CCNGG	1 cut(s)	14
MvnI	CGCG	2 cut(s)	188, 190
NaeI	GCCGGC	1 cut(s)	258
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	1 cut(s)	9
NgoMIV	GCCGGC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	246
NmeAIII	GCCGAG	1 cut(s)	151
NspI	RCATGY	1 cut(s)	34
PaqCI	CACCTGC	1 cut(s)	187
PdiI	GCCGGC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	135, 240
PleI	GAGTC	2 cut(s)	13, 223
PpsI	GAGTC	2 cut(s)	13, 223
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	114, 244
RsaI	GTAC	2 cut(s)	29, 185
RsaNI	GTAC	2 cut(s)	28, 184
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	2 cut(s)	134, 239
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	2 cut(s)	114, 244
SchI	GAGTC	2 cut(s)	14, 223
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	5 cut(s)	51, 66, 127, 201, 206
SinI	GGWCC	2 cut(s)	114, 244
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	4 cut(s)	133, 142, 190, 236
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	56
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	152
TseI	GCWGC	1 cut(s)	238
TspRI	CASTG	1 cut(s)	152
VpaK11BI	GGWCC	2 cut(s)	114, 244
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.