Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Reverse (-)

18362866 .. 18363255

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG141700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGAGTCGATCTCGGCAGGCGAGAAGTACATGCAGATTAAGAAGAAGCTCAGGGAATTGAAGCTCCACACAGTCTCCGAGGAGGCCAAGTGTCCCAATCTCGGTGAGTGCTGGTTTTGTAATGCGAAGACTTCGAGGACTCCTCCGCTGCTGGACCCCAATGAGCTGGCGAATGTGGAGGAGGCGATTGCGTCGTGGGGGTTGGATTATGTGGTGATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

74

Amino Acids

8.34

Weight (kDa)

5.32

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIAS_N	PF16881	3 - 31	1.1e-07	N-terminal domain of lipoyl synthase of Radical_SAM family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	146
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	3 cut(s)	49, 64, 166
AluI	AGCT	3 cut(s)	49, 64, 166
Alw26I	GTCTC	1 cut(s)	79
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	134
BplI	GAGNNNNNCTC	3 cut(s)	28, 127, 159
Bpu10I	CCTNAGC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	78
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 74, 89, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	64
BseRI	GAGGAG	3 cut(s)	95, 132, 194
BseXI	GCAGC	1 cut(s)	135
BshFI	GGCC	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	19, 168
BstDEI	CTNAG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	134
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	19, 168
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	4 cut(s)	49, 64, 86, 166
CviKI_1	RGCY	4 cut(s)	49, 64, 86, 166
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	154
FaeI	CATG	1 cut(s)	34
FaiI	YATR	2 cut(s)	32, 210
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	86
HgaI	GACGC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	2 cut(s)	5, 139
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	34
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	5 cut(s)	3, 37, 97, 137, 152
Lsp1109I	GCAGC	1 cut(s)	135
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	2 cut(s)	55, 139
MluCI	AATT	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	14, 133
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	6 cut(s)	73, 76, 129, 153, 172, 175
MseI	TTAA	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	148
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	156
NspI	RCATGY	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	150
PleI	GAGTC	2 cut(s)	13, 133
PpsI	GAGTC	2 cut(s)	13, 133
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	154
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	14, 133
SetI	ASST	3 cut(s)	51, 66, 168
SinI	GGWCC	1 cut(s)	154
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	8, 134
TasI	AATT	1 cut(s)	56
TatI	WGTACW	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseI	GCWGC	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	154
XceI	RCATGY	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.