Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Reverse (-)

34439847 .. 34440262

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024316

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCAAACTCGGTTCTCAGCCCTGACTCGAACCCTAAAGTCCATGACCCAATCCTTCTCCTCTCCGCGCTGCGAAGGTTCGTACTCTATAGAGGTCAGCACAAAGAAGAAGCAGCTACCGAAGTCGAAATGGATGGAGGAGTCGATCCCCGGCGACGAGAAGTACATGCAGATTAAGAAGAAGCTCAGGGAATTGAAGCTCTACGCGATTTGCAAGGAGGCTAAGTGTCCCAATCTCGGCGAGTGCTGGTCTGGCTGCGAAACCGGCACCGTTACCGCCACGATCATGATTCTCGGCGACACGTGTACACACGGTTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

108

Amino Acids

12.05

Weight (kDa)

9.13

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIAS_N	PF16881	34 - 76	4e-08	N-terminal domain of lipoyl synthase of Radical_SAM family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AccII	CGCG	2 cut(s)	67, 206
AciI	CCGC	2 cut(s)	65, 276
AclWI	GGATC	1 cut(s)	139
AcvI	CACGTG	1 cut(s)	303
AfaI	GTAC	3 cut(s)	83, 164, 307
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflIII	ACRYGT	2 cut(s)	300, 302
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	3 cut(s)	115, 184, 199
AluI	AGCT	3 cut(s)	115, 184, 199
AlwI	GGATC	1 cut(s)	139
ApeKI	GCWGC	3 cut(s)	69, 112, 255
AspLEI	GCGC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	266
BbrPI	CACGTG	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	56, 124, 242
BccI	CCATC	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	87
BisI	GCNGC	3 cut(s)	70, 113, 256
BlsI	GCNGC	3 cut(s)	71, 114, 257
Bme1390I	CCNGG	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse118I	RCCGGY	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	2 cut(s)	30, 199
BseRI	GAGGAG	2 cut(s)	49, 152
BseXI	GCAGC	3 cut(s)	56, 124, 242
Bsh1236I	CGCG	2 cut(s)	67, 206
BshNI	GGYRCC	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	150, 264
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	213
Bsp1407I	TGTACA	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	144, 282
BspACI	CCGC	2 cut(s)	65, 276
BspCNI	CTCAG	2 cut(s)	29, 198
BspFNI	CGCG	2 cut(s)	67, 206
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	263
BsrGI	TGTACA	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	2 cut(s)	144, 282
Bst4CI	ACNGT	2 cut(s)	271, 314
BstAUI	TGTACA	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	303
BstDEI	CTNAG	3 cut(s)	16, 185, 222
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	2 cut(s)	67, 206
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	147, 285
BstMBI	GATC	2 cut(s)	144, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 264
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	87
BstUI	CGCG	2 cut(s)	67, 206
BstV1I	GCAGC	3 cut(s)	56, 124, 242
BtsCI	GGATG	1 cut(s)	138
CciI	TCATGA	1 cut(s)	285
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	82, 163, 306
CviAII	CATG	3 cut(s)	43, 166, 286
CviJI	RGCY	6 cut(s)	20, 115, 184, 199, 221, 255
CviKI_1	RGCY	6 cut(s)	20, 115, 184, 199, 221, 255
CviQI	GTAC	3 cut(s)	82, 163, 306
DdeI	CTNAG	3 cut(s)	16, 185, 222
DpnI	GATC	2 cut(s)	146, 284
DpnII	GATC	2 cut(s)	144, 282
Eco72I	CACGTG	1 cut(s)	303
FaeI	CATG	3 cut(s)	46, 169, 289
FaiI	YATR	4 cut(s)	44, 89, 167, 287
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	3 cut(s)	42, 165, 285
Fnu4HI	GCNGC	3 cut(s)	70, 113, 256
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	3 cut(s)	70, 113, 256
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	3 cut(s)	70, 113, 256
HapII	CCGG	2 cut(s)	150, 264
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	46, 169, 289
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	25, 140, 289
HpaII	CCGG	2 cut(s)	150, 264
Hpy166II	GTNNAC	2 cut(s)	306, 308
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	2 cut(s)	306, 308
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	2 cut(s)	64, 68
HpyCH4III	ACNGT	2 cut(s)	271, 314
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	4 cut(s)	4, 169, 213, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 264
HpyF3I	CTNAG	3 cut(s)	16, 185, 222
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	46, 169, 289
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	144, 282
LpnPI	CCDG	6 cut(s)	35, 163, 172, 232, 237, 277
Lsp1109I	GCAGC	3 cut(s)	56, 124, 242
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	146, 284
MboI	GATC	2 cut(s)	144, 282
MboII	GAAGA	2 cut(s)	118, 190
MluCI	AATT	1 cut(s)	191
MlyI	GAGTC	2 cut(s)	19, 149
MnlI	CCTC	4 cut(s)	70, 85, 130, 211
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	2 cut(s)	150, 264
MspR9I	CCNGG	1 cut(s)	150
MvnI	CGCG	2 cut(s)	67, 206
MwoI	GCNNNNNNNGC	2 cut(s)	252, 264
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	144, 282
NlaIII	CATG	3 cut(s)	46, 169, 289
NlaIV	GGNNCC	1 cut(s)	268
NmeAIII	GCCGAG	2 cut(s)	216, 273
NspI	RCATGY	1 cut(s)	169
PagI	TCATGA	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	3 cut(s)	71, 114, 257
PleI	GAGTC	2 cut(s)	19, 148
PmaCI	CACGTG	1 cut(s)	303
PmlI	CACGTG	1 cut(s)	303
PpsI	GAGTC	2 cut(s)	19, 148
Ppu21I	YACGTR	1 cut(s)	303
PspCI	CACGTG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	268
RsaI	GTAC	3 cut(s)	83, 164, 307
RsaNI	GTAC	3 cut(s)	82, 163, 306
RseI	CAYNNNNRTG	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	3 cut(s)	70, 113, 256
Sau3AI	GATC	2 cut(s)	144, 282
SchI	GAGTC	2 cut(s)	19, 149
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	6 cut(s)	79, 96, 117, 186, 201, 305
SfcI	CTRYAG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	284
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	2 cut(s)	65, 276
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	2 cut(s)	271, 314
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	3 cut(s)	28, 125, 143
TasI	AATT	1 cut(s)	191
TatI	WGTACW	2 cut(s)	162, 305
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	3 cut(s)	69, 112, 255
XceI	RCATGY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.