Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Reverse (-)

19536889 .. 19541152

Gene Structure 4264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017660

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCTTCTTCTAAGCCGGTTCGAGTAGCTGCTTGCATTCTATGGCTTCTGTTCTTCACGCTTCCCTCTTCTTCTTCCTCTGAATCGCCGATTGAGTATTCTCTAGAAGGCGAAGGTTCGTACTCCGTGGACGTCGGCACGAAGAAGAAGCCGCTACCTAAGCCAAAATGGATGGAGTCGATCCCGGCCGGCGAGAAGTACATGCAGATTAAGAAGAAACTCAGGGACTTGAAGCTCCACACAGTCTGCGAGGAGGCCAAGTGTCCCAATCTCGGCGAGTGCTGGTCCGGCGGAGGTTTAAGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

103

Amino Acids

11.28

Weight (kDa)

8.93

Isoelectric Point (pI)

65.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIAS_N	PF16881	48 - 88	3.4e-12	N-terminal domain of lipoyl synthase of Radical_SAM family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	135
AciI	CCGC	2 cut(s)	152, 291
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	122, 200
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	2 cut(s)	29, 235
AluI	AGCT	2 cut(s)	29, 235
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	2 cut(s)	186, 255
ApeKI	GCWGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	285
AsuC2I	CCSGG	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	185
BfaI	CTAG	1 cut(s)	104
BisI	GCNGC	2 cut(s)	30, 152
BlsI	GCNGC	2 cut(s)	31, 153
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	2 cut(s)	16, 188
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	266
BseX3I	CGGCCG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	188, 257
BsiEI	CGRYCG	1 cut(s)	189
BsiSI	CCGG	4 cut(s)	17, 185, 189, 288
BslFI	GGGAC	2 cut(s)	239, 249
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmFI	GGGAC	2 cut(s)	239, 249
BsmI	GAATGC	1 cut(s)	36
BsnI	GGCC	2 cut(s)	188, 257
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	2 cut(s)	152, 291
BspANI	GGCC	2 cut(s)	188, 257
BspCNI	CTCAG	1 cut(s)	234
BspPI	GGATC	1 cut(s)	175
BsrFI	RCCGGY	2 cut(s)	16, 188
BssAI	RCCGGY	2 cut(s)	16, 188
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	73
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	34, 190
BstDEI	CTNAG	3 cut(s)	12, 159, 221
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 288
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	16
BstZI	CGGCCG	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	188, 257
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	34, 190
Cfr10I	RCCGGY	2 cut(s)	16, 188
Cfr13I	GGNCC	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	121, 199
CviAII	CATG	1 cut(s)	202
CviQI	GTAC	2 cut(s)	121, 199
DdeI	CTNAG	3 cut(s)	12, 159, 221
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	186
EagI	CGGCCG	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	306
EclXI	CGGCCG	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	285
Eco52I	CGGCCG	1 cut(s)	186
FaeI	CATG	1 cut(s)	205
FaiI	YATR	2 cut(s)	43, 203
FaqI	GGGAC	2 cut(s)	239, 249
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	30, 152
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	30, 152
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	2 cut(s)	30, 152
HaeIII	GGCC	2 cut(s)	188, 257
HapII	CCGG	4 cut(s)	17, 185, 189, 288
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	205
HinfI	GANTC	2 cut(s)	83, 176
HpaII	CCGG	4 cut(s)	17, 185, 189, 288
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	101, 107
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	36, 205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 288
HpyF3I	CTNAG	3 cut(s)	12, 159, 221
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	205
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	6 cut(s)	30, 198, 202, 208, 268, 301
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	132
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	7 cut(s)	46, 60, 63, 66, 154, 157, 226
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	76, 88, 244, 247, 287
MroNI	GCCGGC	1 cut(s)	188
MseI	TTAA	2 cut(s)	210, 299
MspI	CCGG	4 cut(s)	17, 185, 189, 288
MspR9I	CCNGG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	160, 288
NaeI	GCCGGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	1 cut(s)	180
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	1 cut(s)	205
NmeAIII	GCCGAG	1 cut(s)	252
NspI	RCATGY	1 cut(s)	205
PctI	GAATGC	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	31, 153
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	285
RsaI	GTAC	2 cut(s)	122, 200
RsaNI	GTAC	2 cut(s)	121, 199
SaqAI	TTAA	2 cut(s)	210, 299
SatI	GCNGC	2 cut(s)	30, 152
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	6 cut(s)	31, 118, 135, 160, 237, 298
SinI	GGWCC	1 cut(s)	285
SsiI	CCGC	2 cut(s)	152, 291
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	22, 179
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	210, 299
Tru9I	TTAA	2 cut(s)	210, 299
TseI	GCWGC	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	285
XbaI	TCTAGA	1 cut(s)	103
XceI	RCATGY	1 cut(s)	205
XspI	CTAG	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.