RchiOBHm_Chr4g0404131

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014879
Physical Location & Seq
Forward (+)
23678052 .. 23679399
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37575

Sequence Viewer

Length: 1344 bp
ATGGATTCATCCCAAATATCATCATCCTCTCTTTCTTCAAATGGAACCGTTGAGTATTGCAATTCTGTCTTGGCCGCATTTGATCTGGAACAAGATTTGTTACTTCGTATGTGTGCTAACAACAATCTCCTCTTAGCAGAAAATCTCGACGGCGAAGAAGATGATGCTCAATCATGCCGGAGAGGTGCAATTCCTGGTCACATAGTTGTTTATCGTGATCGAGAAGCTGCTGCACACAATTTGTTTACAGATTATTTTGCGGAGGTCCCCCGATTTGGTGAGCAAAAATTTCGCAGACGTTTTCGAATGAGTAAAAGTTTATTTTATCGGATTGCTGATGCGGTCAAAAATCATGACAATTTCTTTATGCAACAACGCGATGGAATTGGTAGGCTCGGATTGTCATCCTTTGTAAAAATCACAGCTGTTTTTCGAATGCTTGCATATGGTGTACCAGCTGATTCTCTCGATGAATACTTAAAAATTGGTGAGTCCACAGCAATTAGATGCATGAAAAAGTTTTGTCGGGCTATTGTAGAAATATTTGGAGAGCAATATCTCAGAAAACCAACAGCTATTGATGTTGCAAGACTCCTTCATATTGGTGAAGAACGTGGGTTTCCAGGAATGTTAGGAAGCTTAGACTGCATGCACTGGAGGTGGAAAAATTGTCCAGCAGCTTGGGCAGGTGCGTATGCAGGGCGTAGTGGATCGCCAACAATTATTTTAGAAGCAGTTGCTGATTATGATCTTTGGATATGGCATGCATATTTTGGTTTACCAGGCTCCAACAATGACATCATTGTTTTGGAAGCATCCTACTTATTTGCGGAGCTTGCTGCAGGTAAATCACCTCCATGTCATTATTTTATTAAGGATAAGGCTTATGATGTCGGTTATTACTTAGCTGATGGCATATATCCCAAGTGGTCCACACTTGTTCAAACAATTCATGATCCTCAAGGACGAAAAAAACAATTTTTTGCCACAAAGCAAGAATCATGTAGGAAAGATGTTGAACGTGCTTTTGGAGTACTTCAATCACGTTGGGCAATTGTTAAGGGTGCAGCACGTTTTTGGGATAAACGTGTTTTACATGATATAATGACTACATGCATCATTATGCACAATATGATCATTGAGGATGAGCGTGATTTGACAGCTCCGATTAGAGAATTTAATCAGGCGCCAGCCCCTACTGTTGAGATGGTCGTTGATGAAGATGCACGATTTAATCAGTTTCTTGCTCGAAATAGGCAAATCAAAGACAAGACGGCTCATTTTGAACTTCGGGATGCATTGATTGATCATCTATGGGATCGTCATGGCAGAGATGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

447

Amino Acids

51.06

Weight (kDa)

6.37

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 185 - 386 3.9e-104 Plant transposon protein
DDE_Tnp_4 PF13359 214 - 377 2e-09 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 677
Acc36I ACCTGC 2 cut(s) 677, 833
AccB1I GGYRCC 1 cut(s) 1186
AccII CGCG 1 cut(s) 378
AciI CCGC 4 cut(s) 75, 260, 341, 830
AclWI GGATC 3 cut(s) 718, 950, 1326
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 2 cut(s) 287, 1175
AcyI GRCGYC 1 cut(s) 1187
AfaI GTAC 2 cut(s) 453, 1035
AfiI CCNNNNNNNGG 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 1087
AgsI TTSAA 5 cut(s) 39, 944, 1019, 1040, 1286
AjnI CCWGG 3 cut(s) 193, 622, 781
AjuI GAANNNNNNNTTGG 2 cut(s) 1011, 1043
AlwI GGATC 3 cut(s) 718, 950, 1326
AlwNI CAGNNNCTG 1 cut(s) 740
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 5 cut(s) 227, 230, 677, 839, 1067
ApoI RAATTY 2 cut(s) 287, 1175
AspLEI GCGC 1 cut(s) 1189
AspS9I GGNCC 2 cut(s) 265, 930
AsuHPI GGTGA 4 cut(s) 290, 500, 617, 843
AsuII TTCGAA 2 cut(s) 304, 433
AvaII GGWCC 2 cut(s) 265, 930
BanI GGYRCC 1 cut(s) 1186
BbvI GCAGC 5 cut(s) 214, 217, 689, 826, 1079
BccI CCATC 3 cut(s) 374, 905, 1201
BceAI ACGGC 2 cut(s) 166, 1290
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BciT130I CCWGG 3 cut(s) 195, 624, 783
BclI TGATCA 2 cut(s) 1134, 1306
BfmI CTRYAG 1 cut(s) 840
BfoI RGCGCY 1 cut(s) 1190
BfuAI ACCTGC 2 cut(s) 677, 833
BisI GCNGC 6 cut(s) 75, 228, 231, 678, 840, 1068
BlsI GCNGC 6 cut(s) 76, 229, 232, 679, 841, 1069
BmcAI AGTACT 1 cut(s) 1035
Bme1390I CCNGG 3 cut(s) 195, 624, 783
Bme18I GGWCC 2 cut(s) 265, 930
BmgT120I GGNCC 2 cut(s) 265, 930
BmiI GGNNCC 4 cut(s) 46, 267, 787, 1188
BmrFI CCNGG 3 cut(s) 195, 624, 783
BmsI GCATC 7 cut(s) 154, 328, 497, 824, 1125, 1213, 1285
BpmI CTGGAG 1 cut(s) 676
Bpu14I TTCGAA 2 cut(s) 304, 433
BpuEI CTTGAG 1 cut(s) 945
BsaBI GATNNNNATC 2 cut(s) 403, 747
BsaHI GRCGYC 1 cut(s) 1187
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 659
Bse8I GATNNNNATC 2 cut(s) 403, 747
BseBI CCWGG 3 cut(s) 195, 624, 783
BseGI GGATG 6 cut(s) 8, 23, 404, 815, 1150, 1300
BseJI GATNNNNATC 2 cut(s) 403, 747
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 574
BseNI ACTGG 1 cut(s) 659
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 5 cut(s) 214, 217, 689, 826, 1079
BsgI GTGCAG 2 cut(s) 216, 1086
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 1186
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 441
BsnI GGCC 1 cut(s) 74
Bsp119I TTCGAA 2 cut(s) 304, 433
Bsp143I GATC 8 cut(s) 82, 217, 710, 748, 955, 1134, 1306, 1318
BspACI CCGC 4 cut(s) 75, 260, 341, 830
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 573
BspFNI CGCG 1 cut(s) 378
BspHI TCATGA 2 cut(s) 352, 952
BspLI GGNNCC 4 cut(s) 46, 267, 787, 1188
BspMAI CTGCAG 1 cut(s) 844
BspMI ACCTGC 2 cut(s) 677, 833
BspPI GGATC 3 cut(s) 718, 950, 1326
BspT104I TTCGAA 2 cut(s) 304, 433
BspT107I GGYRCC 1 cut(s) 1186
BsrI ACTGG 1 cut(s) 659
BssMI GATC 8 cut(s) 82, 217, 710, 748, 955, 1134, 1306, 1318
BssNI GRCGYC 1 cut(s) 1187
Bst2UI CCWGG 3 cut(s) 195, 624, 783
Bst4CI ACNGT 2 cut(s) 49, 1201
BstACI GRCGYC 1 cut(s) 1187
BstBI TTCGAA 2 cut(s) 304, 433
BstC8I GCNNGC 5 cut(s) 441, 650, 765, 837, 1191
BstDEI CTNAG 4 cut(s) 133, 560, 640, 904
BstF5I GGATG 6 cut(s) 8, 23, 404, 815, 1150, 1300
BstFNI CGCG 1 cut(s) 378
BstH2I RGCGCY 1 cut(s) 1190
BstHHI GCGC 1 cut(s) 1189
BstKTI GATC 8 cut(s) 85, 220, 713, 751, 958, 1137, 1309, 1321
BstMBI GATC 8 cut(s) 82, 217, 710, 748, 955, 1134, 1306, 1318
BstMWI GCNNNNNNNGC 3 cut(s) 645, 683, 836
BstNI CCWGG 3 cut(s) 195, 624, 783
BstNSI RCATGY 3 cut(s) 652, 767, 1116
BstSCI CCNGG 3 cut(s) 193, 622, 781
BstSFI CTRYAG 1 cut(s) 840
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 5 cut(s) 214, 217, 689, 826, 1079
BstXI CCANNNNNNTGG 1 cut(s) 681
BsuRI GGCC 1 cut(s) 74
BtgZI GCGATG 1 cut(s) 393
BtsCI GGATG 6 cut(s) 8, 23, 404, 815, 1150, 1300
BtsIMutI CAGTG 1 cut(s) 652
BveI ACCTGC 2 cut(s) 677, 833
Cac8I GCNNGC 5 cut(s) 441, 650, 765, 837, 1191
CaiI CAGNNNCTG 1 cut(s) 740
CciI TCATGA 2 cut(s) 352, 952
CfoI GCGC 1 cut(s) 1189
Cfr13I GGNCC 2 cut(s) 265, 930
Csp6I GTAC 2 cut(s) 452, 1034
CviQI GTAC 2 cut(s) 452, 1034
DdeI CTNAG 4 cut(s) 133, 560, 640, 904
DinI GGCGCC 1 cut(s) 1188
DpnI GATC 8 cut(s) 84, 219, 712, 750, 957, 1136, 1308, 1320
DpnII GATC 8 cut(s) 82, 217, 710, 748, 955, 1134, 1306, 1318
EaeI YGGCCR 1 cut(s) 72
Eco47I GGWCC 2 cut(s) 265, 930
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 3 cut(s) 193, 622, 781
EcoT22I ATGCAT 4 cut(s) 512, 769, 1118, 1300
EgeI GGCGCC 1 cut(s) 1188
EheI GGCGCC 1 cut(s) 1188
FaqI GGGAC 1 cut(s) 251
FauNDI CATATG 1 cut(s) 445
FbaI TGATCA 2 cut(s) 1134, 1306
Fnu4HI GCNGC 6 cut(s) 75, 228, 231, 678, 840, 1068
FokI GGATG 5 cut(s) 10, 391, 802, 1157, 1307
Fsp4HI GCNGC 6 cut(s) 75, 228, 231, 678, 840, 1068
GlaI GCGC 1 cut(s) 1188
GluI GCNGC 6 cut(s) 75, 228, 231, 678, 840, 1068
GsuI CTGGAG 1 cut(s) 676
HaeII RGCGCY 1 cut(s) 1190
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 178
HhaI GCGC 1 cut(s) 1189
Hin1I GRCGYC 1 cut(s) 1187
Hin6I GCGC 1 cut(s) 1187
HinP1I GCGC 1 cut(s) 1187
HindIII AAGCTT 2 cut(s) 637, 1338
HinfI GANTC 5 cut(s) 5, 461, 491, 591, 998
HpaII CCGG 1 cut(s) 178
HphI GGTGA 4 cut(s) 290, 500, 617, 843
Hpy166II GTNNAC 5 cut(s) 246, 452, 495, 779, 933
Hpy188I TCNGA 4 cut(s) 330, 398, 563, 1167
Hpy188III TCNNGA 8 cut(s) 86, 146, 215, 221, 353, 467, 953, 1292
Hpy8I GTNNAC 5 cut(s) 246, 452, 495, 779, 933
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 605
HpyCH4III ACNGT 2 cut(s) 49, 1201
HpyCH4IV ACGT 6 cut(s) 298, 613, 1021, 1045, 1072, 1087
HpyF10VI GCNNNNNNNGC 3 cut(s) 645, 683, 836
HpyF3I CTNAG 4 cut(s) 133, 560, 640, 904
HpySE526I ACGT 6 cut(s) 298, 613, 1021, 1045, 1072, 1087
Hsp92I GRCGYC 1 cut(s) 1187
HspAI GCGC 1 cut(s) 1187
KasI GGCGCC 1 cut(s) 1186
Ksp22I TGATCA 2 cut(s) 1134, 1306
Kzo9I GATC 8 cut(s) 82, 217, 710, 748, 955, 1134, 1306, 1318
LmnI GCTCC 3 cut(s) 791, 832, 1168
Lsp1109I GCAGC 5 cut(s) 214, 217, 689, 826, 1079
LweI GCATC 7 cut(s) 154, 328, 497, 824, 1125, 1213, 1285
MaeII ACGT 6 cut(s) 298, 613, 1021, 1045, 1072, 1087
MaeIII GTNAC 2 cut(s) 99, 197
MalI GATC 8 cut(s) 84, 219, 712, 750, 957, 1136, 1308, 1320
MboI GATC 8 cut(s) 82, 217, 710, 748, 955, 1134, 1306, 1318
MboII GAAGA 5 cut(s) 27, 167, 170, 620, 1232
MfeI CAATTG 1 cut(s) 1053
Mly113I GGCGCC 1 cut(s) 1187
MlyI GAGTC 2 cut(s) 500, 585
MmeI TCCRAC 1 cut(s) 813
MnlI CCTC 8 cut(s) 37, 140, 176, 256, 651, 864, 969, 1135
Mph1103I ATGCAT 4 cut(s) 512, 769, 1118, 1300
MseI TTAA 5 cut(s) 479, 873, 1059, 1179, 1233
MslI CAYNNNNRTG 3 cut(s) 603, 856, 1121
MspA1I CMGCKG 2 cut(s) 425, 458
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 3 cut(s) 195, 624, 783
MunI CAATTG 1 cut(s) 1053
Mva1269I GAATGC 1 cut(s) 441
MvaI CCWGG 3 cut(s) 195, 624, 783
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 3 cut(s) 645, 683, 836
NarI GGCGCC 1 cut(s) 1187
NdeI CATATG 1 cut(s) 445
NdeII GATC 8 cut(s) 82, 217, 710, 748, 955, 1134, 1306, 1318
NlaIV GGNNCC 4 cut(s) 46, 267, 787, 1188
NmuCI GTSAC 1 cut(s) 197
NsiI ATGCAT 4 cut(s) 512, 769, 1118, 1300
NspI RCATGY 3 cut(s) 652, 767, 1116
NspV TTCGAA 2 cut(s) 304, 433
PaeI GCATGC 2 cut(s) 652, 767
PagI TCATGA 2 cut(s) 352, 952
PaqCI CACCTGC 1 cut(s) 677
PctI GAATGC 1 cut(s) 441
PfeI GAWTC 3 cut(s) 5, 461, 998
PfoI TCCNGGA 1 cut(s) 622
PkrI GCNGC 6 cut(s) 76, 229, 232, 679, 841, 1069
PleI GAGTC 2 cut(s) 499, 585
PluTI GGCGCC 1 cut(s) 1190
PpsI GAGTC 2 cut(s) 499, 585
PpuMI RGGWCCY 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 3 cut(s) 193, 622, 781
PspGI CCWGG 3 cut(s) 193, 622, 781
PspN4I GGNNCC 4 cut(s) 46, 267, 787, 1188
PspPI GGNCC 2 cut(s) 265, 930
PspPPI RGGWCCY 1 cut(s) 265
PstI CTGCAG 1 cut(s) 844
PstNI CAGNNNCTG 1 cut(s) 740
PvuII CAGCTG 2 cut(s) 425, 458
RsaI GTAC 2 cut(s) 453, 1035
RsaNI GTAC 2 cut(s) 452, 1034
RseI CAYNNNNRTG 3 cut(s) 603, 856, 1121
SaqAI TTAA 5 cut(s) 479, 873, 1059, 1179, 1233
SatI GCNGC 6 cut(s) 75, 228, 231, 678, 840, 1068
Sau3AI GATC 8 cut(s) 82, 217, 710, 748, 955, 1134, 1306, 1318
Sau96I GGNCC 2 cut(s) 265, 930
ScaI AGTACT 1 cut(s) 1035
SchI GAGTC 2 cut(s) 500, 585
ScrFI CCNGG 3 cut(s) 195, 624, 783
SfaNI GCATC 7 cut(s) 154, 328, 497, 824, 1125, 1213, 1285
SfcI CTRYAG 1 cut(s) 840
SfoI GGCGCC 1 cut(s) 1188
SfuI TTCGAA 2 cut(s) 304, 433
SinI GGWCC 2 cut(s) 265, 930
SmiMI CAYNNNNRTG 3 cut(s) 603, 856, 1121
SmlI CTYRAG 1 cut(s) 960
SmoI CTYRAG 1 cut(s) 960
SphI GCATGC 2 cut(s) 652, 767
SsiI CCGC 4 cut(s) 75, 260, 341, 830
SspDI GGCGCC 1 cut(s) 1186
SspI AATATT 1 cut(s) 543
StyD4I CCNGG 3 cut(s) 193, 622, 781
TaaI ACNGT 2 cut(s) 49, 1201
TaiI ACGT 6 cut(s) 301, 616, 1024, 1048, 1075, 1090
TaqI TCGA 6 cut(s) 147, 220, 304, 433, 468, 1249
TatI WGTACW 1 cut(s) 1033
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 3 cut(s) 5, 461, 998
Tru1I TTAA 5 cut(s) 479, 873, 1059, 1179, 1233
Tru9I TTAA 5 cut(s) 479, 873, 1059, 1179, 1233
TscAI CASTG 1 cut(s) 659
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 5 cut(s) 227, 230, 677, 839, 1067
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 5 cut(s) 486, 527, 587, 941, 1233
TspRI CASTG 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 265, 930
XapI RAATTY 2 cut(s) 287, 1175
XceI RCATGY 3 cut(s) 652, 767, 1116
ZrmI AGTACT 1 cut(s) 1035
Zsp2I ATGCAT 4 cut(s) 512, 769, 1118, 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.