Rw7G029730

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014879
Physical Location & Seq
Forward (+)
41483461 .. 41484801
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G029730.1

Sequence Viewer

Length: 1095 bp
ATGAGTAATTCCCAAATATCATCATCCTCTTTGTCTTCAAACGGAACAGATGATTATTATTATCGGGTCATGGCTTCATTTGATGAGGAGCAAGATTTATTGCTTCACATGTATGCAAATAATAATCACCTCTTGGCAGAGTTGGATGGCAATGAGGACGACGAGGCCGAATCGAGGCAAGCTGGATATAATCTATACATGGACTACTTTGCTGAGGTTCCGCGATTCAGAGAAGCAAAATTTCGCAGACGATTTCGAATGAGCAAAAGTTTATTTCATCAAATTGTGGAAGCCGTCAAAGATTACGACAATTTCTTTGTGCAACAATGCGATGGTATTGGTAAGCTCGGATTATCATCTTTGCAAAAATTTACAGCTGTTTTTCGAATGCTTGCATATGGTGTACCAGCTGATGCTCTTGATGAATATTTAAAAATTGCTGTTATAGAGGTCTTTGGAAAAGGCTATCTAAGAACACCTAACGCCGAGGATGTTGCGAGACTTTTGTATATAGGTGAAGAACGTGGGTTCCCAGGAATGTTAGGGAGCTTAGATTGCATGCATTGGCCATCTCACCTATTTGCAAATCTTGCGGAAGGTAAATCTCCTCCCGTTAATTATAAGATTCTAGAAAAAGATTATGACACCGGTTATTATTTAGCAGATGGTATATATCCTAAGTGGTCTACACTAGTGCAAACTATTCATGATCCTCAAGGTCCAAAAAAAGTATTGTTTGCCAAAAAACAAGAGTCGTGTCGGAAGGACATTGAACGAGCATTTGGAGTTCTTCAATCACGTTGGGCAATTGTCAAGGGACTAGCACATTTTTGGAATAAATGTGTTTTACATGATATAATGACTACATGCATCATAATGCATAACATGATAATCGAAGATGAGCGTGATCTAAGTGTTCCAATAAATGATTTCAATCAAGCCCCTGCGTTATCTGTTGGGTTGGTAACTAATGAAACTACACAGTTCGAGGAGTTCCTTGCTCGACATAGGAAAATTAAAGACAAGTCGGCTCATATTGCACTTCGTAATGCATTGATTGATCATATATGGAACCGACATGGTATACATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

364

Amino Acids

41.75

Weight (kDa)

5.97

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 156 - 189 1.9e-11 Plant transposon protein
Plant_tran PF04827 191 - 304 1.2e-53 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 621
AccI GTMKAC 2 cut(s) 686, 1084
AccII CGCG 1 cut(s) 223
AciI CCGC 2 cut(s) 221, 593
AclWI GGATC 1 cut(s) 704
AcoI YGGCCR 1 cut(s) 566
AcsI RAATTY 2 cut(s) 239, 368
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 1 cut(s) 174
AflIII ACRYGT 1 cut(s) 108
AgeI ACCGGT 1 cut(s) 647
AgsI TTSAA 4 cut(s) 39, 773, 794, 934
AhlI ACTAGT 1 cut(s) 691
AjnI CCWGG 1 cut(s) 532
AjuI GAANNNNNNNTTGG 2 cut(s) 765, 797
AloI GAACNNNNNNTCC 2 cut(s) 513, 545
AluBI AGCT 5 cut(s) 182, 346, 377, 410, 549
AluI AGCT 5 cut(s) 182, 346, 377, 410, 549
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 1 cut(s) 704
AoxI GGCC 2 cut(s) 165, 566
ApoI RAATTY 2 cut(s) 239, 368
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AsiGI ACCGGT 1 cut(s) 647
AspS9I GGNCC 1 cut(s) 719
AsuHPI GGTGA 3 cut(s) 119, 527, 566
AsuII TTCGAA 2 cut(s) 256, 385
AvaII GGWCC 1 cut(s) 719
BalI TGGCCA 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 27
BbvCI CCTCAGC 1 cut(s) 213
BccI CCATC 4 cut(s) 140, 326, 577, 659
BceAI ACGGC 1 cut(s) 278
BcgI CGANNNNNNTGC 2 cut(s) 476, 510
BciT130I CCWGG 1 cut(s) 534
BclI TGATCA 1 cut(s) 1060
BcoDI GTCTC 1 cut(s) 493
BcuI ACTAGT 1 cut(s) 691
BfaI CTAG 3 cut(s) 629, 692, 821
Bme1390I CCNGG 1 cut(s) 534
Bme18I GGWCC 1 cut(s) 719
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 3 cut(s) 219, 530, 1073
BmrFI CCNGG 1 cut(s) 534
BmsI GCATC 2 cut(s) 403, 879
BpiI GAAGAC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 213
Bpu14I TTCGAA 2 cut(s) 256, 385
BpuEI CTTGAG 1 cut(s) 699
BsaBI GATNNNNATC 2 cut(s) 355, 933
BsaJI CCNNGG 2 cut(s) 486, 532
BsaWI WCCGGW 1 cut(s) 647
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 647
Bse3DI GCAATG 1 cut(s) 157
Bse8I GATNNNNATC 2 cut(s) 355, 933
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 2 cut(s) 486, 532
BseGI GGATG 3 cut(s) 23, 151, 496
BseJI GATNNNNATC 2 cut(s) 355, 933
BseLI CCNNNNNNNGG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 3 cut(s) 101, 597, 1004
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 2 cut(s) 167, 568
BshTI ACCGGT 1 cut(s) 647
BsiSI CCGG 1 cut(s) 648
BslFI GGGAC 1 cut(s) 831
BslI CCNNNNNNNGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 493
BsmFI GGGAC 1 cut(s) 831
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 2 cut(s) 167, 568
Bsp119I TTCGAA 2 cut(s) 256, 385
Bsp143I GATC 3 cut(s) 709, 907, 1060
BspACI CCGC 2 cut(s) 221, 593
BspANI GGCC 2 cut(s) 167, 568
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 3 cut(s) 219, 530, 1073
BspPI GGATC 1 cut(s) 704
BspT104I TTCGAA 2 cut(s) 256, 385
BsrDI GCAATG 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 647
BssAI RCCGGY 1 cut(s) 647
BssECI CCNNGG 2 cut(s) 486, 532
BssMI GATC 3 cut(s) 709, 907, 1060
BssNAI GTATAC 1 cut(s) 1085
Bst1107I GTATAC 1 cut(s) 1085
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 1 cut(s) 984
BstAPI GCANNNNNTGC 1 cut(s) 590
BstBI TTCGAA 2 cut(s) 256, 385
BstC8I GCNNGC 3 cut(s) 180, 393, 560
BstDEI CTNAG 5 cut(s) 213, 470, 550, 678, 911
BstF5I GGATG 3 cut(s) 23, 151, 496
BstFNI CGCG 1 cut(s) 223
BstKTI GATC 3 cut(s) 712, 910, 1063
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 3 cut(s) 709, 907, 1060
BstMWI GCNNNNNNNGC 3 cut(s) 555, 590, 1037
BstNI CCWGG 1 cut(s) 534
BstNSI RCATGY 3 cut(s) 112, 562, 870
BstSCI CCNGG 1 cut(s) 532
BstUI CGCG 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 27
BstZ17I GTATAC 1 cut(s) 1085
BsuRI GGCC 2 cut(s) 167, 568
BtgZI GCGATG 1 cut(s) 345
BtsCI GGATG 3 cut(s) 23, 151, 496
Cac8I GCNNGC 3 cut(s) 180, 393, 560
CciI TCATGA 1 cut(s) 706
Cfr10I RCCGGY 1 cut(s) 647
Cfr13I GGNCC 1 cut(s) 719
Csp6I GTAC 1 cut(s) 404
CspAI ACCGGT 1 cut(s) 647
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 5 cut(s) 213, 470, 550, 678, 911
DpnI GATC 3 cut(s) 711, 909, 1062
DpnII GATC 3 cut(s) 709, 907, 1060
DraI TTTAAA 1 cut(s) 432
EaeI YGGCCR 1 cut(s) 566
Eco47I GGWCC 1 cut(s) 719
EcoRII CCWGG 1 cut(s) 532
EcoT22I ATGCAT 4 cut(s) 564, 872, 882, 1054
FaqI GGGAC 1 cut(s) 831
FauNDI CATATG 1 cut(s) 397
FbaI TGATCA 1 cut(s) 1060
FblI GTMKAC 2 cut(s) 686, 1084
FokI GGATG 3 cut(s) 10, 158, 503
FspBI CTAG 3 cut(s) 629, 692, 821
HaeIII GGCC 2 cut(s) 167, 568
HapII CCGG 1 cut(s) 648
HinfI GANTC 4 cut(s) 170, 225, 625, 752
HpaII CCGG 1 cut(s) 648
HphI GGTGA 3 cut(s) 119, 527, 566
Hpy166II GTNNAC 3 cut(s) 404, 687, 1085
Hpy188I TCNGA 3 cut(s) 230, 350, 762
Hpy188III TCNNGA 3 cut(s) 419, 629, 707
Hpy8I GTNNAC 3 cut(s) 404, 687, 1085
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 590, 757
HpyCH4III ACNGT 1 cut(s) 984
HpyCH4IV ACGT 2 cut(s) 523, 799
HpyF10VI GCNNNNNNNGC 3 cut(s) 555, 590, 1037
HpyF3I CTNAG 5 cut(s) 213, 470, 550, 678, 911
HpySE526I ACGT 2 cut(s) 523, 799
Ksp22I TGATCA 1 cut(s) 1060
Kzo9I GATC 3 cut(s) 709, 907, 1060
LmnI GCTCC 2 cut(s) 88, 546
LpnPI CCDG 6 cut(s) 168, 420, 519, 546, 661, 957
LweI GCATC 2 cut(s) 403, 879
MaeI CTAG 3 cut(s) 629, 692, 821
MaeII ACGT 2 cut(s) 523, 799
MaeIII GTNAC 1 cut(s) 964
MalI GATC 3 cut(s) 711, 909, 1062
MboI GATC 3 cut(s) 709, 907, 1060
MboII GAAGA 4 cut(s) 27, 530, 782, 908
MfeI CAATTG 1 cut(s) 807
MlsI TGGCCA 1 cut(s) 568
MluCI AATT 9 cut(s) 7, 239, 282, 310, 368, 435, 616, 807, 1014
MluNI TGGCCA 1 cut(s) 568
MlyI GAGTC 1 cut(s) 761
MmeI TCCRAC 2 cut(s) 123, 740
Mox20I TGGCCA 1 cut(s) 568
Mph1103I ATGCAT 4 cut(s) 564, 872, 882, 1054
MscI TGGCCA 1 cut(s) 568
MseI TTAA 3 cut(s) 431, 615, 1017
MslI CAYNNNNRTG 2 cut(s) 111, 875
Msp20I TGGCCA 1 cut(s) 568
MspA1I CMGCKG 2 cut(s) 377, 410
MspI CCGG 1 cut(s) 648
MspR9I CCNGG 1 cut(s) 534
MunI CAATTG 1 cut(s) 807
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 1 cut(s) 534
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 3 cut(s) 555, 590, 1037
NdeI CATATG 1 cut(s) 397
NdeII GATC 3 cut(s) 709, 907, 1060
NlaIV GGNNCC 3 cut(s) 219, 530, 1073
NmeAIII GCCGAG 1 cut(s) 511
NsiI ATGCAT 4 cut(s) 564, 872, 882, 1054
NspI RCATGY 3 cut(s) 112, 562, 870
NspV TTCGAA 2 cut(s) 256, 385
PaeI GCATGC 1 cut(s) 562
PagI TCATGA 1 cut(s) 706
PciI ACATGT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 393
PfeI GAWTC 3 cut(s) 170, 225, 625
PinAI ACCGGT 1 cut(s) 647
PleI GAGTC 1 cut(s) 760
PpsI GAGTC 1 cut(s) 760
PscI ACATGT 1 cut(s) 108
PsiI TTATAA 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 3 cut(s) 219, 530, 1073
PspPI GGNCC 1 cut(s) 719
PvuII CAGCTG 2 cut(s) 377, 410
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 2 cut(s) 111, 875
SaqAI TTAA 3 cut(s) 431, 615, 1017
Sau3AI GATC 3 cut(s) 709, 907, 1060
Sau96I GGNCC 1 cut(s) 719
SchI GAGTC 1 cut(s) 761
ScrFI CCNGG 1 cut(s) 534
SfaNI GCATC 2 cut(s) 403, 879
SfuI TTCGAA 2 cut(s) 256, 385
SinI GGWCC 1 cut(s) 719
SmiMI CAYNNNNRTG 2 cut(s) 111, 875
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
SpeI ACTAGT 1 cut(s) 691
SphI GCATGC 1 cut(s) 562
Sse9I AATT 9 cut(s) 7, 239, 282, 310, 368, 435, 616, 807, 1014
SsiI CCGC 2 cut(s) 221, 593
SspI AATATT 1 cut(s) 428
SspMI CTAG 3 cut(s) 629, 692, 821
StyD4I CCNGG 1 cut(s) 532
TaaI ACNGT 1 cut(s) 984
TaiI ACGT 2 cut(s) 526, 802
TaqI TCGA 6 cut(s) 173, 256, 385, 894, 987, 1003
TasI AATT 9 cut(s) 7, 239, 282, 310, 368, 435, 616, 807, 1014
TfiI GAWTC 3 cut(s) 170, 225, 625
Tru1I TTAA 3 cut(s) 431, 615, 1017
Tru9I TTAA 3 cut(s) 431, 615, 1017
TspDTI ATGAA 5 cut(s) 66, 266, 438, 695, 987
TspGWI ACGGA 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 719
XapI RAATTY 2 cut(s) 239, 368
XbaI TCTAGA 1 cut(s) 628
XceI RCATGY 3 cut(s) 112, 562, 870
XmiI GTMKAC 2 cut(s) 686, 1084
XspI CTAG 3 cut(s) 629, 692, 821
Zsp2I ATGCAT 4 cut(s) 564, 872, 882, 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.