Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000149.1

Orthogroup ID

OG0014879

Physical Location & Seq

Genomic Coordinates Forward (+)

112117 .. 113465

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000149.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

atggattcatcccaaatatcatcatcctctctttcttcaaatggaaccgttgagtattgcaattctgtcttggccgcatttgatcgggagcaagatttgttacttcgtatgtgtgctaacaacaatctcctcttagcagaaaatctcgacaatgaagaagatgatgctcaatcatgtcggagaggtgcaattcctgattattttgcggaggtcccccgatttggtgagcaaaaatttcgcagacgttttcgaatgagtaaaagtttattttatcggattgctgatgcggtcaaaaatcatgacaatttctttatgaaacaacgcgatggaattggtaggctcagattgtcatcctttgtaaaaatcacagctgtttttcgaatgcttgcatatggtgtaccagctgattctctcgatgaatacttaaaaattggtgagtccacagcaattagatgcatgaaaaagttttgtcgggctattgtagaaatatttggagagcaatatctcagaaaaccaacagctattgatgttgcaagactccttcatattggtgaagaacgtgggtttccaggaatgttaggaagcttagactgcatgcactggaggtggaaaaattgtccagcagcttgggcaggtgcttatgtagggcgtagtggatcgccaacaattattctagaagcaggtgctgattatgatctttggatatggcatgcatattttggtttaccaggctccaacaatgacatcaatgttttggaagcatcctacttatttgcggagcttgctgcaggtaaatcacctccatgtcattattttattaaggataaagcatatgatgtcggttattacttagctgatggcatatatcccaagtggtccacacttgttcaaacaattcatgatcctcaaggacgaaaaaaacaattttttgccacaaagcaagaagcatgtaggaaagatgttgaacgtgcttttggagttcttcaatcacgttgggcaattgttaagggtgcagcacgtttttgggataaacgtgttttacatgatataatgactacatgcatcattatgcacaatatgatcattgaggatgagcatgatttgacagctccgattagagaatttaatcaagcgccagctcctactgttgagatgatcgttgatgaagatgcacgatttaatcagtttcttgctcgaaataggcaaatcaaagacaagacggctcattttgaacttcgggatgcattgattgatcatctgtgggatcgtcatggcagagatgaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

429

Amino Acids

49.17

Weight (kDa)

6.65

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35490
rosa_chinensis	RchiOBHm_Chr4g0404131
rosa_multiflora	Rmu_sc0000149.1_g000031 Rmu_sc0001240.1_g000015 Rmu_sc0001744.1_g000005 Rmu_sc0002308.1_g000015 Rmu_sc0002475.1_g000023 Rmu_sc0002666.1_g000023 Rmu_sc0010547.1_g000011 Rmu_sc0014826.1_g000003 Rmu_ssc0000134.1_g000004
rosa_wichuraiana	Rw2G035720 Rw4G006380 Rw5G041660 Rw7G024320 Rw7G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	623, 671
Acc36I	ACCTGC	3 cut(s)	623, 671, 779
AccII	CGCG	1 cut(s)	324
AciI	CCGC	4 cut(s)	75, 206, 287, 776
AclWI	GGATC	3 cut(s)	664, 896, 1272
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	233, 1121
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	1033
AgsI	TTSAA	5 cut(s)	39, 890, 965, 986, 1232
AjnI	CCWGG	2 cut(s)	568, 727
AjuI	GAANNNNNNNTTGG	2 cut(s)	957, 989
AlwI	GGATC	3 cut(s)	664, 896, 1272
AlwNI	CAGNNNCTG	1 cut(s)	686
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	3 cut(s)	623, 785, 1013
ApoI	RAATTY	2 cut(s)	233, 1121
AspLEI	GCGC	1 cut(s)	1135
AspS9I	GGNCC	2 cut(s)	211, 876
AsuHPI	GGTGA	4 cut(s)	236, 446, 563, 789
AsuII	TTCGAA	2 cut(s)	250, 379
AvaII	GGWCC	2 cut(s)	211, 876
BbvI	GCAGC	3 cut(s)	635, 772, 1025
BccI	CCATC	2 cut(s)	320, 851
BceAI	ACGGC	1 cut(s)	1236
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	2 cut(s)	570, 729
BclI	TGATCA	2 cut(s)	1080, 1252
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	1 cut(s)	786
BfoI	RGCGCY	1 cut(s)	1136
BfuAI	ACCTGC	3 cut(s)	623, 671, 779
BisI	GCNGC	4 cut(s)	75, 624, 786, 1014
BlsI	GCNGC	4 cut(s)	76, 625, 787, 1015
Bme1390I	CCNGG	2 cut(s)	570, 729
Bme18I	GGWCC	2 cut(s)	211, 876
BmgT120I	GGNCC	2 cut(s)	211, 876
BmiI	GGNNCC	3 cut(s)	46, 213, 733
BmrFI	CCNGG	2 cut(s)	570, 729
BmsI	GCATC	7 cut(s)	154, 274, 443, 770, 1071, 1159, 1231
BpmI	CTGGAG	1 cut(s)	622
Bpu14I	TTCGAA	2 cut(s)	250, 379
BpuEI	CTTGAG	1 cut(s)	891
BsaBI	GATNNNNATC	2 cut(s)	349, 693
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	605
Bse8I	GATNNNNATC	2 cut(s)	349, 693
BseBI	CCWGG	2 cut(s)	570, 729
BseGI	GGATG	6 cut(s)	8, 23, 350, 761, 1096, 1246
BseJI	GATNNNNATC	2 cut(s)	349, 693
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	355, 520
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	635, 772, 1025
BsgI	GTGCAG	1 cut(s)	1032
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	74
Bsp119I	TTCGAA	2 cut(s)	250, 379
Bsp143I	GATC	8 cut(s)	82, 656, 694, 901, 1080, 1155, 1252, 1264
BspACI	CCGC	4 cut(s)	75, 206, 287, 776
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	2 cut(s)	354, 519
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	2 cut(s)	298, 898
BspLI	GGNNCC	3 cut(s)	46, 213, 733
BspMAI	CTGCAG	1 cut(s)	790
BspMI	ACCTGC	3 cut(s)	623, 671, 779
BspPI	GGATC	3 cut(s)	664, 896, 1272
BspT104I	TTCGAA	2 cut(s)	250, 379
BsrI	ACTGG	1 cut(s)	605
BssMI	GATC	8 cut(s)	82, 656, 694, 901, 1080, 1155, 1252, 1264
Bst2UI	CCWGG	2 cut(s)	570, 729
Bst4CI	ACNGT	2 cut(s)	49, 1147
BstBI	TTCGAA	2 cut(s)	250, 379
BstC8I	GCNNGC	5 cut(s)	387, 596, 711, 783, 1137
BstDEI	CTNAG	5 cut(s)	133, 341, 506, 586, 850
BstF5I	GGATG	6 cut(s)	8, 23, 350, 761, 1096, 1246
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	1136
BstHHI	GCGC	1 cut(s)	1135
BstKTI	GATC	8 cut(s)	85, 659, 697, 904, 1083, 1158, 1255, 1267
BstMBI	GATC	8 cut(s)	82, 656, 694, 901, 1080, 1155, 1252, 1264
BstMWI	GCNNNNNNNGC	3 cut(s)	591, 629, 782
BstNI	CCWGG	2 cut(s)	570, 729
BstNSI	RCATGY	4 cut(s)	598, 713, 951, 1062
BstSCI	CCNGG	2 cut(s)	568, 727
BstSFI	CTRYAG	1 cut(s)	786
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	635, 772, 1025
BstXI	CCANNNNNNTGG	1 cut(s)	627
BsuRI	GGCC	1 cut(s)	74
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	6 cut(s)	8, 23, 350, 761, 1096, 1246
BtsIMutI	CAGTG	1 cut(s)	598
BveI	ACCTGC	3 cut(s)	623, 671, 779
Cac8I	GCNNGC	5 cut(s)	387, 596, 711, 783, 1137
CaiI	CAGNNNCTG	1 cut(s)	686
CciI	TCATGA	2 cut(s)	298, 898
CfoI	GCGC	1 cut(s)	1135
Cfr13I	GGNCC	2 cut(s)	211, 876
Csp6I	GTAC	1 cut(s)	398
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	5 cut(s)	133, 341, 506, 586, 850
DpnI	GATC	8 cut(s)	84, 658, 696, 903, 1082, 1157, 1254, 1266
DpnII	GATC	8 cut(s)	82, 656, 694, 901, 1080, 1155, 1252, 1264
EaeI	YGGCCR	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	211, 876
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	568, 727
EcoT22I	ATGCAT	4 cut(s)	458, 715, 1064, 1246
FaqI	GGGAC	1 cut(s)	197
FauNDI	CATATG	2 cut(s)	391, 832
FbaI	TGATCA	2 cut(s)	1080, 1252
Fnu4HI	GCNGC	4 cut(s)	75, 624, 786, 1014
FokI	GGATG	5 cut(s)	10, 337, 748, 1103, 1253
Fsp4HI	GCNGC	4 cut(s)	75, 624, 786, 1014
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	1 cut(s)	1134
GluI	GCNGC	4 cut(s)	75, 624, 786, 1014
GsuI	CTGGAG	1 cut(s)	622
HaeII	RGCGCY	1 cut(s)	1136
HaeIII	GGCC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	1135
Hin6I	GCGC	1 cut(s)	1133
HinP1I	GCGC	1 cut(s)	1133
HindIII	AAGCTT	2 cut(s)	583, 1284
HinfI	GANTC	4 cut(s)	5, 407, 437, 537
HphI	GGTGA	4 cut(s)	236, 446, 563, 789
Hpy166II	GTNNAC	4 cut(s)	398, 441, 725, 879
Hpy188I	TCNGA	5 cut(s)	180, 276, 344, 509, 1113
Hpy188III	TCNNGA	8 cut(s)	86, 146, 194, 299, 413, 674, 899, 1238
Hpy8I	GTNNAC	4 cut(s)	398, 441, 725, 879
HpyAV	CCTTC	1 cut(s)	551
HpyCH4III	ACNGT	2 cut(s)	49, 1147
HpyCH4IV	ACGT	6 cut(s)	244, 559, 967, 991, 1018, 1033
HpyF10VI	GCNNNNNNNGC	3 cut(s)	591, 629, 782
HpyF3I	CTNAG	5 cut(s)	133, 341, 506, 586, 850
HpySE526I	ACGT	6 cut(s)	244, 559, 967, 991, 1018, 1033
HspAI	GCGC	1 cut(s)	1133
Ksp22I	TGATCA	2 cut(s)	1080, 1252
Kzo9I	GATC	8 cut(s)	82, 656, 694, 901, 1080, 1155, 1252, 1264
LmnI	GCTCC	5 cut(s)	88, 737, 778, 1114, 1144
Lsp1109I	GCAGC	3 cut(s)	635, 772, 1025
LweI	GCATC	7 cut(s)	154, 274, 443, 770, 1071, 1159, 1231
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	6 cut(s)	244, 559, 967, 991, 1018, 1033
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	8 cut(s)	84, 658, 696, 903, 1082, 1157, 1254, 1266
MboI	GATC	8 cut(s)	82, 656, 694, 901, 1080, 1155, 1252, 1264
MboII	GAAGA	6 cut(s)	27, 167, 170, 566, 974, 1178
MfeI	CAATTG	1 cut(s)	999
MlyI	GAGTC	2 cut(s)	446, 531
MmeI	TCCRAC	2 cut(s)	158, 759
MnlI	CCTC	8 cut(s)	37, 140, 176, 202, 597, 810, 915, 1081
Mph1103I	ATGCAT	4 cut(s)	458, 715, 1064, 1246
MseI	TTAA	5 cut(s)	425, 819, 1005, 1125, 1179
MslI	CAYNNNNRTG	3 cut(s)	549, 802, 1067
MspA1I	CMGCKG	2 cut(s)	371, 404
MspR9I	CCNGG	2 cut(s)	570, 729
MunI	CAATTG	1 cut(s)	999
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	2 cut(s)	570, 729
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	591, 629, 782
NdeI	CATATG	2 cut(s)	391, 832
NdeII	GATC	8 cut(s)	82, 656, 694, 901, 1080, 1155, 1252, 1264
NlaIV	GGNNCC	3 cut(s)	46, 213, 733
NsiI	ATGCAT	4 cut(s)	458, 715, 1064, 1246
NspI	RCATGY	4 cut(s)	598, 713, 951, 1062
NspV	TTCGAA	2 cut(s)	250, 379
PaeI	GCATGC	2 cut(s)	598, 713
PagI	TCATGA	2 cut(s)	298, 898
PaqCI	CACCTGC	2 cut(s)	623, 671
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	5, 407
PfoI	TCCNGGA	1 cut(s)	568
PkrI	GCNGC	4 cut(s)	76, 625, 787, 1015
PleI	GAGTC	2 cut(s)	445, 531
PpsI	GAGTC	2 cut(s)	445, 531
PpuMI	RGGWCCY	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	568, 727
PspGI	CCWGG	2 cut(s)	568, 727
PspN4I	GGNNCC	3 cut(s)	46, 213, 733
PspPI	GGNCC	2 cut(s)	211, 876
PspPPI	RGGWCCY	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	686
PvuII	CAGCTG	2 cut(s)	371, 404
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	3 cut(s)	549, 802, 1067
SaqAI	TTAA	5 cut(s)	425, 819, 1005, 1125, 1179
SatI	GCNGC	4 cut(s)	75, 624, 786, 1014
Sau3AI	GATC	8 cut(s)	82, 656, 694, 901, 1080, 1155, 1252, 1264
Sau96I	GGNCC	2 cut(s)	211, 876
SchI	GAGTC	2 cut(s)	446, 531
ScrFI	CCNGG	2 cut(s)	570, 729
SfaNI	GCATC	7 cut(s)	154, 274, 443, 770, 1071, 1159, 1231
SfcI	CTRYAG	1 cut(s)	786
SfuI	TTCGAA	2 cut(s)	250, 379
SinI	GGWCC	2 cut(s)	211, 876
SmiMI	CAYNNNNRTG	3 cut(s)	549, 802, 1067
SmlI	CTYRAG	1 cut(s)	906
SmoI	CTYRAG	1 cut(s)	906
SphI	GCATGC	2 cut(s)	598, 713
SsiI	CCGC	4 cut(s)	75, 206, 287, 776
SspI	AATATT	1 cut(s)	489
SspMI	CTAG	1 cut(s)	674
StyD4I	CCNGG	2 cut(s)	568, 727
TaaI	ACNGT	2 cut(s)	49, 1147
TaiI	ACGT	6 cut(s)	247, 562, 970, 994, 1021, 1036
TaqI	TCGA	5 cut(s)	147, 250, 379, 414, 1195
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	5, 407
Tru1I	TTAA	5 cut(s)	425, 819, 1005, 1125, 1179
Tru9I	TTAA	5 cut(s)	425, 819, 1005, 1125, 1179
TscAI	CASTG	1 cut(s)	605
TseI	GCWGC	3 cut(s)	623, 785, 1013
TspDTI	ATGAA	7 cut(s)	168, 329, 432, 473, 533, 887, 1179
TspRI	CASTG	1 cut(s)	605
VpaK11BI	GGWCC	2 cut(s)	211, 876
XapI	RAATTY	2 cut(s)	233, 1121
XbaI	TCTAGA	1 cut(s)	673
XceI	RCATGY	4 cut(s)	598, 713, 951, 1062
XspI	CTAG	1 cut(s)	674
Zsp2I	ATGCAT	4 cut(s)	458, 715, 1064, 1246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.